Plant FIBer expression Database

Lus10017416 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56210 205 / 9e-67 ARM repeat superfamily protein (.1.2.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010218
[exp]
218 / 9e-72 AT3G56210 162 / 5e-51 ARM repeat superfamily protein (.1.2.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G075600
[exp]
218 / 9e-72 AT3G56210 198 / 5e-65 ARM repeat superfamily protein (.1.2.4.5)
PFAM info
Representative CDS sequence
>Lus10017416 pacid=23140195 polypeptide=Lus10017416 locus=Lus10017416.g ID=Lus10017416.BGIv1.0 annot-version=v1.0
ATGAATAACAAAGGATCGAAGGGATGGACATGGCGTAGGAAGAAGAAGGTGAAGCTCAACTCAGCTCAGCTCGCAAAACGGAGATATGCGCACATTAGCA
GCTCAACTAAGAACGGTAATCACTTTCGGAGAAAGCCGTCTTTCCGATATATGATTCCCTCGTTCCATTTCATTGAATCGTATCTTATTCGCAGTATTTG
CGCGGGATCCCCGTCGGAAATGCGCCGCGGCGGCACCGCAATTTCTCGTCATCGTCGGTCAACAGAGAAAGTGGCGATGGAGGAGGAAGCGGAGAGGAAG
ATAGGGTGGGTGCTGAAGCTAATCTTCGCCGGAACCGCCACCACCATCGGCTATCAGTTCTTCCCTTATATGGGAGATAATTTGGTGCATCAGTCGATTT
CGCTTCTGCAAGTGAAAGATCCTTACTTCAAAAGAACTGGAGCTTCTAGACTTACTCGGTTTGCTGTCGATGATGAAAGGAGGATGAAAGTAGTGGAACT
GGGTGGTGCTCAAGAGCTGGTTAACATGTTGCAGGCTGCTAAAGATGATCGGACCAGGAAATCCGCACTCGAAGCTCTTGCAGCCTTGTCAAACTCAGAT
AAAGCCATTGGAGCTTTACGTGCGTTCGGTGCAGTTTCAGTGGTTCAGTCTACTCCAAGTTCGGTGGAGGAAGCTGATATTGACAAGTACAAAACAAGCA
TACTGAAAAGGTTTCAAGATCTGAGACACAATGAATCCTCGTAG
AA sequence
>Lus10017416 pacid=23140195 polypeptide=Lus10017416 locus=Lus10017416.g ID=Lus10017416.BGIv1.0 annot-version=v1.0
MNNKGSKGWTWRRKKKVKLNSAQLAKRRYAHISSSTKNGNHFRRKPSFRYMIPSFHFIESYLIRSICAGSPSEMRRGGTAISRHRRSTEKVAMEEEAERK
IGWVLKLIFAGTATTIGYQFFPYMGDNLVHQSISLLQVKDPYFKRTGASRLTRFAVDDERRMKVVELGGAQELVNMLQAAKDDRTRKSALEALAALSNSD
KAIGALRAFGAVSVVQSTPSSVEEADIDKYKTSILKRFQDLRHNESS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56210 ARM repeat superfamily protein... Lus10017416
[exp]
0 1
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10015106
[exp]
2.6 0.9508
AT1G67420 Zn-dependent exopeptidases sup... Lus10015792
[exp]
3.2 0.9470
AT5G57280 RID2 root initiation defective 2, S... Lus10028960
[exp]
4.0 0.9402
AT1G09800 Pseudouridine synthase family ... Lus10035791
[exp]
4.5 0.9396
AT2G04630 NRPE6B, NRPB6B RNA polymerase Rpb6 (.1) Lus10015000
[exp]
4.7 0.9275
AT4G26210 Mitochondrial ATP synthase sub... Lus10001771
[exp]
5.5 0.9386
AT5G47570 unknown protein Lus10000735
[exp]
5.9 0.9095
AT4G28360 Ribosomal protein L22p/L17e fa... Lus10006865
[exp]
6.9 0.9410
AT5G35620 eIFiso4E, EIF(I... LOSS OF SUSCEPTIBILITY TO POTY... Lus10023733
[exp]
7.1 0.9286
AT2G04790 unknown protein Lus10006402
[exp]
9.6 0.9125

Lus10017416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.