Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 141 / 5e-35 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 140 / 9e-35 TAO1 target of AVRB operation1 (.1) AT5G18360 135 / 4e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 133 / 2e-32 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G51630 132 / 4e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G38350 128 / 7e-31 Disease resistance protein (NBS-LRR class) family (.1) AT5G46470 126 / 3e-30 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 120 / 5e-28 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 119 / 6e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 119 / 9e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010223 [exp] 781 / 0 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10024150 [exp] 740 / 0 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010221 [exp] 738 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017418 [exp] 737 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10015648 [exp] 568 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001537 [exp] 559 / 0 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10042778 [exp] 350 / 6e-112 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 336 / 3e-102 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 325 / 5e-101 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 205 / 3e-56 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 200 / 1e-54 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 199 / 2e-54 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098900 [exp] 184 / 2e-49 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 184 / 3e-49 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 181 / 2e-48 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 176 / 2e-46 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 174 / 5e-46 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098700 [exp] 170 / 1e-44 AT5G17680 379 / 3e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 161 / 2e-41 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017420 pacid=23140226 polypeptide=Lus10017420 locus=Lus10017420.g ID=Lus10017420.BGIv1.0 annot-version=v1.0 ATGGTGGTCCTGCCAAAAATGAAGAGAAGAAGAATCGCTGACATGCATTGGAAAGGAAAATGTCCATTGGAGGAACATCGAATGACAGAAGGTATACGTT TGGATCTTTCGAAAGCCAAAGAGATGTATTTGGAAGCTGATGCCTTTGAGGGGATGAATTCTCTTAGCTTTCTCAAGTTTCATGGCTATGTGGATAAAAC TAAAGTTCATTTGCCTTATGGTGGACTTAGCTCACTTCCTGATGGGTTGAGATGGTTGGAATGGTATCGATATCCTTCAAAATCTCTACCATCAAATTTT TATCCTCAGCACCTTACCCATCTCATTATACAAGAAAGTCCAATTCAAAGATGTTGGAAAGGACATGACCAACCCCAACTTGTGAACTTGTTGGTACTCA ATCTCTCGTTCTGTAGCAATCTAATTGCTATTCCAAATATATCAAGTTCTTCAAAACTCGAAGAACTCATTCTTTGTGGATGTGAAAGCCTAGTTGAGGT ACCTTGTCATGTCCAATACTTGACCAAGTTGATAACATTAGACCTCGGTCATTGCCTAAACCTCAAGCGTCTTCCGCCTAGACTTGACTCAAAGTTGCTT AAGTATGTTTCGATGGTGAGTTGTCTCAATGTCAGGCACTGCCCGGATATTATTTCAAAAGAGTTGGAGACATTGAATTTAGCTCGGACATCTCTCGTAG AACTACCAAGTGCAATTTACAATGTCAAGAAAAATGGAATCTTATATCTTCATGGTGAAAACATTACCAAATTTCCTGCTGTTACAGCAGACTTGAAGAC TTTTTCTTTGAACAGTACTTCAATAAGAGATATTGATTTGTATGATCGTCACACTTTTTCTGAATTGATTATGCCGAAATTCAACACACTGTGTCTTTCT GGAAATTTGCAACTCAAGAGCCTGCCGAGCAGCATATGGACCATGGTCTCTTATCAACTCGAGATTCGACAGTGCCCTTTGATTGAAATTTTGCCGGAGA TTTTGGAGCCTGTTACAGGCTTAACTAGTATTGAAATACGTGAATGTGGAAACTTCAAAAGCCTGCCATCTAGCATCAACAATATAAGATCTCTCCAACG ACTTGATTTATCAAACACAGGTATTCAATCTCTGCCAGAACTCCCACCAAATCTGGAGACATTGTATGTAAATGGTTGCAAGTTTTTACAAGCTCTACCA AGCTACACAAGTGAGCTGTTGCATCTGAAGAAACTCCATTTTAAGGAATGCCCACAGCTGGCAAATTTCCTTGTTCATCCCATCTTGTATTCGTCACCGG AGTGTGAACTTGTATGTTCAAGAAGTGAGCTTCCTGAATGGTTAACCTACAAAAGCATGAACTTGAAGGAAGAGGACGAGGGTTCTTGCAATGTGAAGGT AGAGTTGCCTCCTCCTAATAACGCTGACCAGCCAATGATTGTTAAGGGAATTGCGTTTGGGTTTGTGTTCTCTTCCAACTTTTTGGTGGATATGATATGC GATTGCAAAGTCGGCAACGCCATCATTGCATCTTGGCATTACACTAACTGGTATTATTACAGTGAACGTGATAAGTCATCAAAAGAAAAATTATGGTTGC AATACGAGAAGATGGCTGTGGGAAGTAAAGAAGACGAAGCGTGGTATGTCAAATATGCTGGAGTCACTGTTTTGTTCAATTTTTACATTCATAACTCGTA TGGAGAAACAATGGAGGAATCCAAAATAAAAGGATGTGGGGTTTGTCTGCTCTACTAA
AA sequence Show only first row Show all	>Lus10017420 pacid=23140226 polypeptide=Lus10017420 locus=Lus10017420.g ID=Lus10017420.BGIv1.0 annot-version=v1.0 MVVLPKMKRRRIADMHWKGKCPLEEHRMTEGIRLDLSKAKEMYLEADAFEGMNSLSFLKFHGYVDKTKVHLPYGGLSSLPDGLRWLEWYRYPSKSLPSNF YPQHLTHLIIQESPIQRCWKGHDQPQLVNLLVLNLSFCSNLIAIPNISSSSKLEELILCGCESLVEVPCHVQYLTKLITLDLGHCLNLKRLPPRLDSKLL KYVSMVSCLNVRHCPDIISKELETLNLARTSLVELPSAIYNVKKNGILYLHGENITKFPAVTADLKTFSLNSTSIRDIDLYDRHTFSELIMPKFNTLCLS GNLQLKSLPSSIWTMVSYQLEIRQCPLIEILPEILEPVTGLTSIEIRECGNFKSLPSSINNIRSLQRLDLSNTGIQSLPELPPNLETLYVNGCKFLQALP SYTSELLHLKKLHFKECPQLANFLVHPILYSSPECELVCSRSELPEWLTYKSMNLKEEDEGSCNVKVELPPPNNADQPMIVKGIAFGFVFSSNFLVDMIC DCKVGNAIIASWHYTNWYYYSERDKSSKEKLWLQYEKMAVGSKEDEAWYVKYAGVTVLFNFYIHNSYGETMEESKIKGCGVCLLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10017420 [exp]	0	1
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10035652 [exp]	1.4	0.8946
AT4G12010			Disease resistance protein (TI...		Lus10017419 [exp]	1.7	0.8927
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	10.5	0.8954
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	12.0	0.8390
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	17.9	0.8709
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	19.4	0.8925
AT1G03290			unknown protein		Lus10028005 [exp]	27.1	0.8888
AT1G57790			F-box family protein (.1)		Lus10014208 [exp]	28.5	0.8346
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	28.8	0.8772
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	34.5	0.8631

Compare expression of checked genes

Lus10017420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.