Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01740 111 / 4e-31 Nuclear transport factor 2 (NTF2) family protein (.1) AT3G10985 108 / 2e-30 WI12, ATWI-12, SAG20 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010223 [exp] 303 / 5e-97 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001261 [exp] 119 / 4e-33 AT5G01740 139 / 1e-41 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10029439 [exp] 106 / 4e-28 AT5G01740 128 / 3e-37 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10022755 [exp] 100 / 1e-25 AT5G01740 135 / 5e-40 Nuclear transport factor 2 (NTF2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G125900 [exp] 143 / 4e-43 AT3G10985 93 / 9e-25 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.013G153801 [exp] 144 / 6e-43 AT3G10985 88 / 3e-22 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.008G075200 [exp] 132 / 7e-40 AT3G10985 131 / 5e-41 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.010G182200 [exp] 131 / 2e-39 AT3G10985 123 / 8e-38 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.016G129500 [exp] 129 / 1e-37 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G129600 [exp] 128 / 2e-37 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF07107 [flax] [poplar] WI12 Wound-induced protein WI12
Representative CDS sequence Show only first row Show all	>Lus10017421 pacid=23140183 polypeptide=Lus10017421 locus=Lus10017421.g ID=Lus10017421.BGIv1.0 annot-version=v1.0 ATGGGCAAGATTCAAAAACTTGCTCGTTTTACATTGGAATTTGGAGCTCTACGAGTGAGGGACCTGGGCGGTGGCCCGGGGCTTCTTCAAGCACTGGCTA ACTCCGACGAGCTGGCAGAAAGTTCTCTGCAAGAAAGGAAGAACCGAGAAGTGGTTATTTCCCTCTATGAGGCCCTGAGCTGCCGCGACGTCGATACAGT CACCAAGATCCTCGCCCACGACCTCGAGTGGTGGTTCCATGGTCCGCCGTCCCACCAGTTTATGATGCGATTGCTCACCGGCGCTGACAACAACAACAAC AAAAATCAGATCCAATCGTTCGAGTTCGTCCCGAAATCAATCGCGTCCTTCGGATCGATCGTGATAGCGGAAGGCTACGATTCGGAGAGGGAGATCTACT GGGTCCACGCGTGGACCGTCACTGATGGGATAATCACCCAGGTAAGGGAGTATTTCAACACTTCTCTCACGGTTACGCGCCTCTCCAGCTCGAAGTACAA CATCAACGGCAGAGGAGGCGGCATCAGGTCGAAGTCGAAGTCGAAGTCATCGACGGCTGAGGTCACGCGCGTGCATTGCCCTTCGATCTGGGAGAGTAGC CTCTCCAAGAAGTCCGTTCCTGGACTCGTTCTCGCCATCTGA
AA sequence Show only first row Show all	>Lus10017421 pacid=23140183 polypeptide=Lus10017421 locus=Lus10017421.g ID=Lus10017421.BGIv1.0 annot-version=v1.0 MGKIQKLARFTLEFGALRVRDLGGGPGLLQALANSDELAESSLQERKNREVVISLYEALSCRDVDTVTKILAHDLEWWFHGPPSHQFMMRLLTGADNNNN KNQIQSFEFVPKSIASFGSIVIAEGYDSEREIYWVHAWTVTDGIITQVREYFNTSLTVTRLSSSKYNINGRGGGIRSKSKSKSSTAEVTRVHCPSIWESS LSKKSVPGLVLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	0	1
AT5G22390			Protein of unknown function (D...		Lus10020626 [exp]	3.0	0.8717
AT1G70420			Protein of unknown function (D...		Lus10030876 [exp]	3.2	0.8607
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	6.7	0.8417
					Lus10005523 [exp]	7.5	0.8291
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	7.7	0.8316
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	7.7	0.8261
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	8.1	0.8298
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	10.2	0.8404
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	10.2	0.8038
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015745 [exp]	16.2	0.8094

Compare expression of checked genes

Lus10017421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.