Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56140 231 / 8e-70 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 213 / 3e-63 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G12470 86 / 1e-18 Protein of unknown function (DUF3411) (.1) AT5G22790 52 / 2e-07 RER1 reticulata-related 1 (.1) AT3G08630 45 / 3e-05 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010224 [exp] 344 / 6e-113 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 246 / 1e-75 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10009845 [exp] 246 / 2e-75 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10019744 [exp] 96 / 4e-22 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 96 / 4e-22 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 91 / 4e-20 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 91 / 4e-20 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10019521 [exp] 53 / 2e-07 AT2G37860 280 / 1e-91 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10043364 [exp] 53 / 2e-07 AT5G22790 428 / 1e-148 reticulata-related 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074300 [exp] 244 / 7e-75 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.009G051800 [exp] 100 / 2e-23 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 97 / 2e-22 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 96 / 3e-22 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 52 / 3e-07 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 50 / 1e-06 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G140700 [exp] 44 / 0.0001 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10017422 pacid=23140228 polypeptide=Lus10017422 locus=Lus10017422.g ID=Lus10017422.BGIv1.0 annot-version=v1.0 ATGAAGCAGCACCACCATATCCACCACCGGCAGTTCTTCACCTCCCCCGCACCAAAACCACCGCTGCTGCAGCCTCCACCACACCTCCACCGACACCACT ACCACCGCGTATCAATTTCAGTCAGCTCCGGTCAGACTACCCCCGGTAGTCCAGAAGAATGCGGCCAGAGTCAAACCAGCAGCTCCATTGGCGCGAAGAG AAGGCATATCCTGATTGCTCCGCTCTTAACTCTCGGCGTTTCCGTCCTCCACTCCTCCGTCTCCAAAGCGGATGACGCAATTCCGCAGCCGGCGTCTCCT CCTCCTCCTCCGGGATCCGTTGTTGATTTCTTCACCGTGTGGCTTCCTGCTCCGACAATTTCCTTCCTTTCCTACGCCGACGATTTGAATCCTACTGACA ACATCGAGTTTTTGAAAGGTTTACTGGGTTCCATCCCGGATAATGCGTTTCAAAAGAATCTAGCGGGAAAGGACTGGAATTTAAGTCACAGAGTGGCATC TGTGCTTGTTGGCGGCCTTAAACTCTCTGGTGTAGGATTTGTTTCCAGTATTGCAGCTGTAGCTTCCTCAAACGCCTTGAATTCGGTTCGCACGCTCATT AGTCCGGAGCCGGTTAAAGTCCAACGGATTAAACGATCTCCAATACTCAAAACTGCAGTTGTATATGCAAGCTTTCTCGGCATATCAGCGAATCTGCGGT ATCAGATTATTGCGGGACTAGTGGAGCATAGGATATCTGATGAACTCTCCTCACAACCAGTACTTGTAGCTATGCTGTCATTTGTCGTTCGGACAATCAA CTCCTATTTGGGAACCCAGCAATGGATCGATCTTGCGCGATTTTCGGGACTACAAAGCAGGAGTAGTGAACCAGAAGCCGTCTCCTCTAATTACCAGGCA GTAGTGGAACCACCATTGAATCTGATTGTGGAATGTGAAACCACCGAAGAATCAAGCAACGAAGTCGAAACAAAGAACTAA
AA sequence Show only first row Show all	>Lus10017422 pacid=23140228 polypeptide=Lus10017422 locus=Lus10017422.g ID=Lus10017422.BGIv1.0 annot-version=v1.0 MKQHHHIHHRQFFTSPAPKPPLLQPPPHLHRHHYHRVSISVSSGQTTPGSPEECGQSQTSSSIGAKRRHILIAPLLTLGVSVLHSSVSKADDAIPQPASP PPPPGSVVDFFTVWLPAPTISFLSYADDLNPTDNIEFLKGLLGSIPDNAFQKNLAGKDWNLSHRVASVLVGGLKLSGVGFVSSIAAVASSNALNSVRTLI SPEPVKVQRIKRSPILKTAVVYASFLGISANLRYQIIAGLVEHRISDELSSQPVLVAMLSFVVRTINSYLGTQQWIDLARFSGLQSRSSEPEAVSSNYQA VVEPPLNLIVECETTEESSNEVETKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	0	1
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	1.0	0.8663
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	3.3	0.7780
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	4.2	0.8239
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	5.1	0.8350
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	5.5	0.7946
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	15.2	0.7902
AT2G41990			unknown protein		Lus10003341 [exp]	17.3	0.7817
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10033576 [exp]	18.8	0.7260
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	19.6	0.7946
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	21.9	0.7775

Compare expression of checked genes

Lus10017422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.