Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56130 234 / 8e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) AT3G15690 131 / 8e-37 Single hybrid motif superfamily protein (.1.2) AT1G52670 130 / 2e-36 Single hybrid motif superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010226 [exp] 482 / 1e-174 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10009843 [exp] 297 / 3e-101 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10040959 [exp] 253 / 4e-83 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Lus10011480 [exp] 127 / 4e-35 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1) Lus10023118 [exp] 122 / 3e-33 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074100 [exp] 267 / 4e-90 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.010G183200 [exp] 252 / 4e-84 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4) Potri.001G172600 [exp] 122 / 3e-33 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2) Potri.003G061400 [exp] 120 / 3e-32 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10017424 pacid=23140246 polypeptide=Lus10017424 locus=Lus10017424.g ID=Lus10017424.BGIv1.0 annot-version=v1.0 ATGGAGTCCTCCGTCTTCTCTCGCTCCTTCCACTGTTCTGTACCAATGATCTCAAGCGTTCAAGCTGTAGCTGGTAGGACCGGTGCAATTTCTGGCTACT TCAGCAGGAAGCTGGTCTGCTCTCCTGCTAAGAGGAGCCTCTCGCTAGCATCGTGCTCGAAGTCTGATGATGGTGCCATATCAGTTGCATCACGAGCTAC GTTTCCCAGAGATTTTGAAGCTCTGGTGCTAGAGGTCTGTGATGAAACGGAAGTTGCAGAGCTGAAATTGAAGGTCGGGGACTTTGAAATGCATCTGAAG CGTAATGTAGGAGCTTCAAAAGCCTCATTGCCCAACATTTCACCAATAGTTGCACCACCGATTCCATCTCAACCAATGGATGTAGCAGCTCCTGCTGCCC CATCAGCACCAGCTGCACCACAACCTCCCCCTCAGAAGAATGAGCCATTCAAGAACGTCTCCTTTGGAAAATCGCCCAGGTTGGCAGCTCTGGAGGCTTC TGGATCTAATGGTTACGTTCTGGTGGCTTCTCCATCGGTTGGTTCGTTTCTGAGGAGTCGTACAAGAAAGGGAAAGGTGCTACCTCAGGTTTGCAAAGAG GTATATGTGCTACCTCAGGGTGATATGATTAGAGAAGGGCAGATAATTGGATATCTTGAACAGTTTGGCGCTCAAGTTCCTGTGAGGTCAGATGTAGCTG GGGAAGTTCTAAAGATGCTCTTTGATGCTGGAGAAGCAGTTGGGTATGGAGACCCTCTTATCGCTGTGTTGCCATCTTTTCACGGGATCGAGAAGTAA
AA sequence Show only first row Show all	>Lus10017424 pacid=23140246 polypeptide=Lus10017424 locus=Lus10017424.g ID=Lus10017424.BGIv1.0 annot-version=v1.0 MESSVFSRSFHCSVPMISSVQAVAGRTGAISGYFSRKLVCSPAKRSLSLASCSKSDDGAISVASRATFPRDFEALVLEVCDETEVAELKLKVGDFEMHLK RNVGASKASLPNISPIVAPPIPSQPMDVAAPAAPSAPAAPQPPPQKNEPFKNVSFGKSPRLAALEASGSNGYVLVASPSVGSFLRSRTRKGKVLPQVCKE VYVLPQGDMIREGQIIGYLEQFGAQVPVRSDVAGEVLKMLFDAGEAVGYGDPLIAVLPSFHGIEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56130			biotin/lipoyl attachment domai...		Lus10017424 [exp]	0	1
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10007735 [exp]	3.7	0.8777
AT2G42110			unknown protein		Lus10029282 [exp]	4.6	0.9037
AT4G17240			unknown protein		Lus10038797 [exp]	22.2	0.8582
AT2G42110			unknown protein		Lus10016261 [exp]	27.1	0.8463
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	35.5	0.8324
AT5G26910			unknown protein		Lus10020689 [exp]	35.9	0.7962
AT5G26330			Cupredoxin superfamily protein...		Lus10002451 [exp]	37.1	0.7623
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	37.9	0.8156
AT3G13275			unknown protein		Lus10007090 [exp]	38.8	0.8116
AT5G48660			B-cell receptor-associated pro...		Lus10011842 [exp]	40.2	0.7920

Compare expression of checked genes

Lus10017424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.