Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56110 196 / 2e-63 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G05380 188 / 3e-60 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT2G38360 182 / 1e-57 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT2G40380 159 / 7e-49 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G01640 152 / 7e-46 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT5G07110 120 / 2e-33 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT1G55190 67 / 1e-13 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 59 / 1e-10 PRA1.E prenylated RAB acceptor 1.E (.1) AT3G13720 58 / 3e-10 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G17700 57 / 4e-10 PRA1.F1 prenylated RAB acceptor 1.F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007533 [exp] 256 / 7e-87 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 231 / 4e-77 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10012224 [exp] 184 / 1e-58 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10002853 [exp] 180 / 1e-56 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 171 / 8e-53 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 158 / 3e-48 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 113 / 1e-31 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10018774 [exp] 80 / 3e-18 AT1G08770 130 / 5e-38 prenylated RAB acceptor 1.E (.1) Lus10014234 [exp] 76 / 3e-17 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074000 [exp] 199 / 9e-65 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 199 / 9e-65 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.010G183300 [exp] 192 / 6e-62 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.016G126400 [exp] 160 / 4e-49 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.006G104400 [exp] 148 / 1e-44 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.019G124100 [exp] 142 / 4e-42 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.005G219100 [exp] 89 / 9e-22 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 86 / 2e-20 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G044000 [exp] 82 / 3e-19 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 76 / 5e-17 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10017425 pacid=23140201 polypeptide=Lus10017425 locus=Lus10017425.g ID=Lus10017425.BGIv1.0 annot-version=v1.0 ATGGCTGCACCTCCTCTCCCGATCACCAATCCATCGTCCCAGGCTGCTGAATCTCAGCCTCCGATCGCTACACCAGCCTTCCGCAGCTTCATCTCCCGAA TCTCCACTTCCGTCCGCCAAGGCTTCTCCCAGCGCCGCCCTTGGTTGGAGCTCGTCGACCGATCCGCATTCACCAAGCCGGAATCTCTCACCGAAGCCGC CGCCCGGATCCGGAAGAACTCGGCTTACTTCAAGGTCAATTACATTTCAATGCTCGTAGTCGTCCTCGCATTCTCCCTACTCTCCCATCCTTTCTCCTTG CTCGTGCTCCTCTCGCTCCTCGCGTCCTGGATCTTTCTCTACCTCTTCCGCCCTTCGGATCAGCCGGTGGTGATCCTCGGCCGCACCTTCTCGGAGCGGG AGACGCTCGGCGTGTTGCTCGTTTCTACTGTTGTCGTAGTTTTCTTGACCAGCGTTGGGTCGCTCTTGATCTCGGCGCTGATGGCAGGAGTTGCGATCGT GTGCGTGCATGGTGCGTTCAGGGTTCCGGAAGATCTATTCCTTGACGAGCAGGAGCCTGCCAATGCTGGACTGCTTTCCTTCCTCGGCGGTGCAGCCTCC TCTGCCGNNNNNNNNNNNNCCTCCTCTCCCGCCGCAGCTGCTGCTCCAGTTGTTGCCGGTCGCGTATGA
AA sequence Show only first row Show all	>Lus10017425 pacid=23140201 polypeptide=Lus10017425 locus=Lus10017425.g ID=Lus10017425.BGIv1.0 annot-version=v1.0 MAAPPLPITNPSSQAAESQPPIATPAFRSFISRISTSVRQGFSQRRPWLELVDRSAFTKPESLTEAAARIRKNSAYFKVNYISMLVVVLAFSLLSHPFSL LVLLSLLASWIFLYLFRPSDQPVVILGRTFSERETLGVLLVSTVVVVFLTSVGSLLISALMAGVAIVCVHGAFRVPEDLFLDEQEPANAGLLSFLGGAAS SAXXXXXSSPAAAAAPVVAGRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	0	1
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	1.4	0.9466
AT3G44150			unknown protein		Lus10016181 [exp]	1.7	0.9455
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	1.7	0.9507
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	2.2	0.9337
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	2.6	0.9263
AT5G57460			unknown protein		Lus10000167 [exp]	3.5	0.9339
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	3.5	0.9121
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	5.5	0.9188
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	6.9	0.9302
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	8.0	0.9237

Compare expression of checked genes

Lus10017425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.