Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40320 537 / 0 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 473 / 4e-166 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01620 304 / 6e-100 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT3G55990 295 / 5e-96 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT1G73140 291 / 2e-95 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40150 290 / 6e-95 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G38320 288 / 4e-94 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G01360 282 / 2e-91 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40160 263 / 2e-84 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G12060 223 / 2e-67 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009839 [exp] 568 / 0 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 559 / 0 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10007528 [exp] 392 / 9e-137 AT2G40320 357 / 7e-123 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10007529 [exp] 301 / 4e-103 AT2G40320 230 / 2e-75 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10014238 [exp] 310 / 8e-103 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10007497 [exp] 301 / 1e-98 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 299 / 4e-98 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10028974 [exp] 299 / 6e-98 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 299 / 8e-98 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073300 [exp] 565 / 0 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 554 / 0 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 307 / 1e-100 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 301 / 5e-98 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 297 / 2e-97 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.016G119100 [exp] 289 / 2e-94 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G125500 [exp] 286 / 2e-93 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.001G376700 [exp] 286 / 2e-93 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 285 / 1e-92 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 278 / 4e-90 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10017428 pacid=23140225 polypeptide=Lus10017428 locus=Lus10017428.g ID=Lus10017428.BGIv1.0 annot-version=v1.0 ATGAAGACCCCCAAGTCCCCTGTTTCTTCTTCTTCATCTTCATCTTCATCTTCATCCTCTTCAACTTCTCCTCTGAGAAAGGCACGGAAATTATCACCAT ACCTATTCACTCTGCTAGCATTCATCTTCTTCGTCGTCACTCTCTACGGGGAAGACTTCCTCTGCCTCCTCTCGAGGCTCGATTACTCGGATTCGACTGT CGTCGAATCCTCCTCTGTTTTATCTCCGCCGGCAGAGAAGGTTCCGTTTGCGGTGGGGAAGACGACGCCGGAAGGGTGTGATTTGTTCAGCGGGAAATGG GTCAGGGACGAGGTGACTCGGCCGCATTACAAGGAATCGGAGTGTCCCTACATCCAGCCTCAGCTGACGTGTCAGGAGCATGGCCGGCCTGACCAGGATT ACATGTTCTGGCGATGGCAGCCTAACGAATGCGATCTCCCCAGCTTCAACGCAACACTAATGCTAGAAAGCCTACGAAACAAACGAATGCTCTACGTCGG CGACTCCCTAAACAGAGGCCAATACGTCTCAATGATCTGCCTCATCCACCGCCTCATCCCAAACCAATCCGCCAAATCTTTCGAAACCACTGGCTCCTTA ACAACTTTCACCGCCAAGGACTACAACGCCACGGTCGAATTCTACTGGGCCCCGTTCCTCCTCGAATCCAACTCCGACGACGCGGTTCTGCCAGGGGGGG GGTTTGACGATGAAGGGAGGGAGATTGTTGAGGTTAAGACGGAGGATGGGTATCGTATGGCGATGAAGAGTATGCTCCGGTGGGTTAGGAAGAATGTGGA TCTGAAGAGTGGGCGGGTTTTTTTCACCGGCATGTCTCCTACTCATGGCAATAGCGCGGAATGGGGAGGGGAGGCAGGGGGCAACTGCTACAACGAGACA GCACCGATCACGGACAACGCAACGTACTGGGGATCGGACAGCAAGAGGAGCATAATGCAGGTGATCGGCGAGGAGTTCCGGAAATCAAAGTTTCCGGTGA CGTTCCTCAACATAACGCAGCTCTCCAACTACCGGAAAGACGCCCACACTTCTATATACAAGAAGCAATGGAGCCCACTGACGCCGGAGCAGCTGGCAAA TCCGGTCAGCTACTCCGACTGTGTCCACTGGTGCTTGCCTGGCCTACAAGATACCTGGAATGAGCTCCTTTTTGCCAAGCTTTTCTACCCCTGA
AA sequence Show only first row Show all	>Lus10017428 pacid=23140225 polypeptide=Lus10017428 locus=Lus10017428.g ID=Lus10017428.BGIv1.0 annot-version=v1.0 MKTPKSPVSSSSSSSSSSSSSTSPLRKARKLSPYLFTLLAFIFFVVTLYGEDFLCLLSRLDYSDSTVVESSSVLSPPAEKVPFAVGKTTPEGCDLFSGKW VRDEVTRPHYKESECPYIQPQLTCQEHGRPDQDYMFWRWQPNECDLPSFNATLMLESLRNKRMLYVGDSLNRGQYVSMICLIHRLIPNQSAKSFETTGSL TTFTAKDYNATVEFYWAPFLLESNSDDAVLPGGGFDDEGREIVEVKTEDGYRMAMKSMLRWVRKNVDLKSGRVFFTGMSPTHGNSAEWGGEAGGNCYNET APITDNATYWGSDSKRSIMQVIGEEFRKSKFPVTFLNITQLSNYRKDAHTSIYKKQWSPLTPEQLANPVSYSDCVHWCLPGLQDTWNELLFAKLFYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	0	1
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	1.4	0.9677
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	1.4	0.9698
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	3.5	0.9513
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	5.5	0.9559
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	5.7	0.9665
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10006399 [exp]	5.9	0.9356
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	7.1	0.9664
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	8.2	0.9664
AT1G76250			unknown protein		Lus10016006 [exp]	11.0	0.9379
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	11.0	0.9544

Compare expression of checked genes

Lus10017428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.