Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40316 280 / 5e-94 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007527 [exp] 491 / 3e-177 AT2G40316 302 / 2e-103 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073200 [exp] 334 / 3e-115 AT2G40316 334 / 7e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [flax] [poplar] M6PR PF09451 [flax] [poplar] ATG27 Autophagy-related protein 27
Representative CDS sequence Show only first row Show all	>Lus10017429 pacid=23140239 polypeptide=Lus10017429 locus=Lus10017429.g ID=Lus10017429.BGIv1.0 annot-version=v1.0 ATGGCGCATGGAATCGATGCTTCGAAATGTCAGCTAATCTGGCTTCCATTATTACTCCTTCTCGCGTTGCTCCACTCCACCTCAGCCGCTCTCTGCGAGC TCAGCCATGCCGATGGCCGCCAGATTTTCAACTTCAGCTTGACTGCTCCTCTACCTGGATTCCCGCATGGGATCCTCAGCGAAGACGGGTTCTACAATGT TGCCAACAATGAGAGCGTGCTCTGGTTTCAGCTCTGTGATAGGATGATCTTTAATCATGACCCGCCTAGATGTTTTGGCTGCCAGGGTTGTGGTCGAACA TCAAACTGTGGTACTGGATGTAGTGCACTTGTAGCGAATAATATAGATGGTTATGACGTATGCAGCACTCTTGGCTCGATTTCGAGCACTGTTACTGAGA TCATGGATGATGAGAATCCACAGAATGGTGTCAATGTTAAGATCTCAAGTCTTGACAATAAGGATAATTGCTCACTTACTGTCTCTGTCATCTGTGATTT AGCTGGACTCAAAGTAAGAAACTTCATTCGTGAAATCCGAAATCTGCCTCTGCTTGGACCTAATTATGGAGTGTCTCTTTCACCTCATCTTCTACAGGGT CCCAGTGCACTGCGGAAGTTAGGACAATGCACATATGCTGCAATTCTACAGCATCCAGCTGGCTGCGCTACAGTTGTATCTGTTCGTGGGAAAGGATTGG GATGGTTTTCCATATTGATAATAGTTATCTTGTCTGTTTTTGGAGCTTATATGATAGCTGGCGCAGTTTATCGGCATTTCTTCCTTGGGATCAATGGATT AGATGCGATCCCGAACTTGAATTTCTGGGTCAGTTTACCTCTCAGAATACAGGGCTATTTCGCTTCTTTGGTTCGGAGATTCAAAGGACCTACCGAGACC TATCGAAGTTCCTATTCTCCTGTCAACTTCTAG
AA sequence Show only first row Show all	>Lus10017429 pacid=23140239 polypeptide=Lus10017429 locus=Lus10017429.g ID=Lus10017429.BGIv1.0 annot-version=v1.0 MAHGIDASKCQLIWLPLLLLLALLHSTSAALCELSHADGRQIFNFSLTAPLPGFPHGILSEDGFYNVANNESVLWFQLCDRMIFNHDPPRCFGCQGCGRT SNCGTGCSALVANNIDGYDVCSTLGSISSTVTEIMDDENPQNGVNVKISSLDNKDNCSLTVSVICDLAGLKVRNFIREIRNLPLLGPNYGVSLSPHLLQG PSALRKLGQCTYAAILQHPAGCATVVSVRGKGLGWFSILIIVILSVFGAYMIAGAVYRHFFLGINGLDAIPNLNFWVSLPLRIQGYFASLVRRFKGPTET YRSSYSPVNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40316			unknown protein		Lus10017429 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10041589 [exp]	4.5	0.6975
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	7.4	0.7573
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	10.8	0.7263
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	13.3	0.7239
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	15.4	0.7222
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	17.2	0.7222
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	18.8	0.7222
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	20.3	0.7222
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	21.7	0.7222
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	23.0	0.7222

Compare expression of checked genes

Lus10017429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.