Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05460 706 / 0 AtENGase85A Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) AT3G11040 686 / 0 AtENGase85B Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) AT3G61010 166 / 2e-44 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007526 [exp] 1309 / 0 AT3G11040 719 / 0.0 Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184200 [exp] 832 / 0 AT5G05460 765 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Potri.010G184300 [exp] 828 / 0 AT5G05460 727 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Potri.008G073001 [exp] 162 / 7e-46 AT3G11040 171 / 1e-49 Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) Potri.008G072901 [exp] 59 / 8e-10 AT5G05460 0 / 1 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03644 [flax] [poplar] Glyco_hydro_85 Glycosyl hydrolase family 85
Representative CDS sequence Show only first row Show all	>Lus10017430 pacid=23140227 polypeptide=Lus10017430 locus=Lus10017430.g ID=Lus10017430.BGIv1.0 annot-version=v1.0 ATGAATGGCTATTCTGGCTCTTTGCGTTGGGGTCACTGTAAAATTGTTGAATGGTGGTGTCTGTTCAAGCAAGTCAAGGTCTCCTCTCTATTCAAATTAA TCAATCAGTCATCTTTGTATATGCTCGTCCGTCTGCTCCGACTCGTAATAAGCCGCGAAACTCTAATCTCAGTGTTCAACCTCCTCCAATTCCTCCGTAC CACAACCCGGTCAATCCTCTCGCGGATCTTCTCCATGGCCAAATCGGAGCAGCAGCAGCGGCAGGATGTGGAACCCGCTTTCGACCCGTTAAAGCCATCA ATTCCAATCTCATACCCACTCAAGACCCTCGAAGAGCTGGAGTCTCGAGCTTACTTTCACTCGTTTCACTACCCTTTCAACAAATCATCCGTCTCTCTTG AATCTCCTTTGCCCCAAAGACCAAGGCTTCTGGTGTGCCACGATATGCAAGGCGGGTATGTGGATGATAAGTGGGTTCAAGGAGGAAGTAATCCGGATGC TTATTCCATCTGGCATTGGTATTTGATGGATGTGTTTGTTTATTTTTCACATTCTTTGGTCACTCTGCCTCCTCCTTGCTGGACTAATGCAGCTCATAGA CATGGAGTGAAGGTGTTGGGGACGTTCATCACAGAATGGGACGAAGGGAGAACAATAAGCAACAAATTGCTTGAAACAGAGGACTCTGCTCGACTGTATG CTGAACGTTTGGCTGAACTTGCTGCTGCTTTAGGCTTTGATGGATGGCTGATCAATATGGAGGTCAAACTGGATCCGAGTCAGATTCCGAATCTAAAGGA ATTCGTTCGCCATCTAACTTGGACTATGCATTCGTTGGTGCCTGGATCAATGGTGATATGGTATGACAGTGTTACAATTGATGGAGAACTTAATTGGCAA GATCAGCTGAATGGAAAGAACAAAGCTTTCTTTGATTTATGTGATGGCATATTTGTCAATTACACATGGAAGAAGGATTATCCTAAGCTTTCGGCTGAAG TAGCCGGCGAGAGAAAGTTCGATGTCTACATGGGAATCGATGTGTTCGGAAGGAACACTTACGGTGGTGGGATGTGGAATACAAACGTTGCCCTCGATGT GATCAAGAGTGATGAGGTTTCGGCTGCCATATTTGCACCGGGATGGGTGTACGAGACCAAGCAGCCACCTGATTTTCGGACTGCTCAAAACCGGTGGTGG AATCTAGTCGAGAATTCGTGGGGAGCTGCTGAGAAGTACCCTAGATCTCTACCATTCTATTCTAGTTTTGATAAGGGCTTTGGGTATCATATATCGATTG ACGGAGAGCAAGTAACAGATGCTTCTTGGAATAACATATCTTGCCAATCGTTTCAGCCTCTACTCAAATATGCTGAAGACTCGAAACCAGATGCCGTACA AGTACTCGTTGATTTCAGGGAATCGTCTTATAATGGCGGAGCAAACATTACATTCAAAGGGACCCTCCAAGACAATGCTTATTTCGAAACAAGGCTGTTC CTCGGAGAGCATCTTTTGGGTTGCGAGCCACTCCGGGTTATGTATTCTGTAAAATCGGAGGGCGATTCTCTACTGGGCCTATCGCTTCATTTCTTCTCTC CCTTAAACAACAAAGAATCAGTAATACTTATCGCACCATGGGAAACCGACGAGCCCTCTCGAAAATTCAACAAAGCAATCGTTCCGCGACTAGTAAAACA CTCTGAAACCAGCACCAGTCCATGGATGCTATACGAGAGCAAGGTCGCAATGAACGGACATATACTTGGGGAGATTCGCGCTGTATGCCACAATCCAAAT GGAGGAAGGCCTGAATATTCTGCTGTGCTCGGCCATATTCTTATGAAGAATTCTGATCATAACTCGCATCTCCCTCCCGCTAATTCATGGCAAGTTACAG CCGAGTTCATCCAATGGAGTACTGAATCATCAGCAGCAACTGCAGACGACGGTGATGGATCGAAAGCAGTCAGCTTAAAGATCAACTGGAAATTAAAAGA TGGAATCGCCACATTTCGGATTCCAACGTACAATGTCTACTACATGGCGAAACAAGCCGGACAGTGCGGCGGAGATTCTAAGTATCTTGGAGTTGCAGCA GTTGAAGCATTCTATGTATATGGTTTGGCTGTTCCTTCTGATGTTTGCAGTCTCAAGTTCATTGTTCAAGCTTGTGGTGCTGATGGTACTTCACTAAAGC TCGACGATTGCCCCTGCTTTGAACTCCAGGTTGAACACAAGTAA
AA sequence Show only first row Show all	>Lus10017430 pacid=23140227 polypeptide=Lus10017430 locus=Lus10017430.g ID=Lus10017430.BGIv1.0 annot-version=v1.0 MNGYSGSLRWGHCKIVEWWCLFKQVKVSSLFKLINQSSLYMLVRLLRLVISRETLISVFNLLQFLRTTTRSILSRIFSMAKSEQQQRQDVEPAFDPLKPS IPISYPLKTLEELESRAYFHSFHYPFNKSSVSLESPLPQRPRLLVCHDMQGGYVDDKWVQGGSNPDAYSIWHWYLMDVFVYFSHSLVTLPPPCWTNAAHR HGVKVLGTFITEWDEGRTISNKLLETEDSARLYAERLAELAAALGFDGWLINMEVKLDPSQIPNLKEFVRHLTWTMHSLVPGSMVIWYDSVTIDGELNWQ DQLNGKNKAFFDLCDGIFVNYTWKKDYPKLSAEVAGERKFDVYMGIDVFGRNTYGGGMWNTNVALDVIKSDEVSAAIFAPGWVYETKQPPDFRTAQNRWW NLVENSWGAAEKYPRSLPFYSSFDKGFGYHISIDGEQVTDASWNNISCQSFQPLLKYAEDSKPDAVQVLVDFRESSYNGGANITFKGTLQDNAYFETRLF LGEHLLGCEPLRVMYSVKSEGDSLLGLSLHFFSPLNNKESVILIAPWETDEPSRKFNKAIVPRLVKHSETSTSPWMLYESKVAMNGHILGEIRAVCHNPN GGRPEYSAVLGHILMKNSDHNSHLPPANSWQVTAEFIQWSTESSAATADDGDGSKAVSLKINWKLKDGIATFRIPTYNVYYMAKQAGQCGGDSKYLGVAA VEAFYVYGLAVPSDVCSLKFIVQACGADGTSLKLDDCPCFELQVEHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	0	1
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	2.0	0.9045
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	4.9	0.8781
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	5.1	0.8899
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	6.0	0.8732
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	8.7	0.8767
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	10.5	0.8871
AT1G16760			Protein kinase protein with ad...		Lus10008609 [exp]	11.5	0.8209
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10036042 [exp]	13.0	0.8122
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	13.3	0.8689
AT2G24370			Protein kinase protein with ad...		Lus10008610 [exp]	13.9	0.8064

Compare expression of checked genes

Lus10017430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.