Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29305 39 / 3e-05 LCR25 low-molecular-weight cysteine-rich 25 (.1) AT4G29300 38 / 4e-05 LCR27 low-molecular-weight cysteine-rich 27 (.1) AT4G29280 37 / 0.0001 LCR22 low-molecular-weight cysteine-rich 22 (.1) AT4G29290 37 / 0.0001 LCR26 low-molecular-weight cysteine-rich 26 (.1) AT4G30067 35 / 0.001 LCR63 low-molecular-weight cysteine-rich 63 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007524 [exp] 81 / 3e-21 ND / Lus10014355 [exp] 37 / 0.0001 AT2G25344 49 / 2e-09 low-molecular-weight cysteine-rich 14 (.1) Lus10015984 [exp] 36 / 0.0004 AT4G29280 47 / 1e-08 low-molecular-weight cysteine-rich 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180750 [exp] 37 / 0.0001 AT4G29280 54 / 4e-11 low-molecular-weight cysteine-rich 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0054 [flax] [poplar] Knottin_1 PF07333 [flax] [poplar] SLR1-BP S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Representative CDS sequence Show only first row Show all	>Lus10017432 pacid=23140259 polypeptide=Lus10017432 locus=Lus10017432.g ID=Lus10017432.BGIv1.0 annot-version=v1.0 ATGGCCTCCAAGTTTCACTGCACCTCGTTGTTTATAATGGTCCTTGTTATCTTAGGCGCTGTAACGATGGTTGAGAAAGTGGAAGCCAAGACTTGTGTGC TTGAGGTGATCGGTACATGGTGCAAAACGGCAGATTGCTTCGAGAGATGCAAGCAATACGGTGCGGATCATGTCGGGTTTTGCATCCCGGAGAAAACTTC TCCCTCCGGGGCTTGTTATTGCCTTTACCCTTGTTCGTCCTAA
AA sequence Show only first row Show all	>Lus10017432 pacid=23140259 polypeptide=Lus10017432 locus=Lus10017432.g ID=Lus10017432.BGIv1.0 annot-version=v1.0 MASKFHCTSLFIMVLVILGAVTMVEKVEAKTCVLEVIGTWCKTADCFERCKQYGADHVGFCIPEKTSPSGACYCLYPCSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29305		LCR25	low-molecular-weight cysteine-...		Lus10017432 [exp]	0	1

Compare expression of checked genes

Lus10017432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.