Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58280 175 / 3e-52 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 135 / 8e-37 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 116 / 2e-30 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 54 / 7e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 47 / 5e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31640 48 / 8e-06 B3 REM5 transcriptional factor B3 family protein (.1) AT3G18990 46 / 2e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G31690 46 / 3e-05 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31680 43 / 0.0003 B3 REM8 Transcriptional factor B3 family protein (.1) AT4G31650 42 / 0.0009 B3 REM6 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007522 [exp] 570 / 0 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 147 / 2e-40 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 144 / 6e-40 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10006483 [exp] 129 / 4e-35 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 130 / 2e-33 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 127 / 2e-32 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10009764 [exp] 121 / 5e-32 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 120 / 6e-30 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 115 / 2e-28 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103200 [exp] 150 / 8e-43 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 145 / 9e-41 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 130 / 1e-35 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 124 / 2e-33 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 123 / 7e-31 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 119 / 2e-29 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 116 / 2e-28 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 114 / 8e-28 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 114 / 9e-28 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 112 / 2e-27 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017434 pacid=23140249 polypeptide=Lus10017434 locus=Lus10017434.g ID=Lus10017434.BGIv1.0 annot-version=v1.0 ATGGCGATGGTGTCGGAAGATGCCACCGACAACACTTACGAAGAGGCTCGGAAACAACGGCTCGAGGAGAATCGGAAGCGCTTTCAGGATTTAGGGATTT CCGATCTCTCCAGATCTCTTTCCAAAGTCTCCAATTCCCCCACTGCTACCTCCAAGCATCGTCAACCGAAACCAAGGTCGAAACCAGGAGATGAGTTTCA GCCACGCCGATCTTCTCGTCCCCGAAACCATATTACTTCCTACGTCGATGATTTTCAAGCCGACTTGGATCTATCAGCTAAGCGCCGTCGTAGCAATGGC TCACGGTTGAATTCATCATGGACAAGCTATGTAGTAAGGCCACTTGAAGAAGTCATACTTGCTTCATTTGAAGAACGTGAACGTGCTCGTATAGCTGCTG AACGTTTCGAAGAAACGCTGCCCTCCGATCATCCGGTGTTCGTCAAATCCATGGTTCGGTCTCATGTTTACAGCTGCTTTTGGTTGGGTCTTCCCTCTCA GTTCTGCGCAAGCCACCTTCCGAAAAGGGACTCGGACATAATACTCGAGGATGAGACTGGCTCAATATATGATACCAAGTACCTCAGCGGAAGGGCTGGT CTTAGCGGTGGCTGGAGGGCATTTGCATTGGAACGCAAACTGAACGACGGTGATGCTGTAGTGTTCGAATTGGTAGAGCCAGAAAGGTTTAAGGTATACA TTTTCAGAACAACATCAGATTCCGGCAGAAAGCCGAATGCAGATGCTGTGGTTTGCAAAGAATCGGATGGCGATCAACAGTCACATAAGAGACAGAGAGT AAAGGAAGATAATGATGACAATGCAGCTGATGAAGAAGGAGCCGCCGAGCCAACACCTAGAAGACTTACTGGTAGAAAAACAGCGGCTAAAAACCAAATG AAGAAGAACGGCTTGGATGAGACAGCCAGAAGAAAGAGTGGGAGAAGATCAACTGTGGCAGCATCAGATGAAATGAACGAGAAAGGTTCGACTGTCGAAG AAGGACGAACTGAGGAACATGCTTTAGTTCCTGAAGAACAGAAGGGGAAACCGAAACCAGTTACAGATGAGAAGGCTGTGGAGGAAGAAGAAGCAGTTTG TGCTAAGGAAGTGAAACCTGCTGCTATCAAGACAAGGAAGAAGGCAGCTCCTAGGCTATTTCGAAAGAAAGTGTATTAA
AA sequence Show only first row Show all	>Lus10017434 pacid=23140249 polypeptide=Lus10017434 locus=Lus10017434.g ID=Lus10017434.BGIv1.0 annot-version=v1.0 MAMVSEDATDNTYEEARKQRLEENRKRFQDLGISDLSRSLSKVSNSPTATSKHRQPKPRSKPGDEFQPRRSSRPRNHITSYVDDFQADLDLSAKRRRSNG SRLNSSWTSYVVRPLEEVILASFEERERARIAAERFEETLPSDHPVFVKSMVRSHVYSCFWLGLPSQFCASHLPKRDSDIILEDETGSIYDTKYLSGRAG LSGGWRAFALERKLNDGDAVVFELVEPERFKVYIFRTTSDSGRKPNADAVVCKESDGDQQSHKRQRVKEDNDDNAADEEGAAEPTPRRLTGRKTAAKNQM KKNGLDETARRKSGRRSTVAASDEMNEKGSTVEEGRTEEHALVPEEQKGKPKPVTDEKAVEEEEAVCAKEVKPAAIKTRKKAAPRLFRKKVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	0	1
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	1.0	0.9759
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	4.6	0.9610
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	4.6	0.9701
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	4.7	0.9704
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	6.3	0.9598
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	9.2	0.9567
AT3G29300			unknown protein		Lus10023634 [exp]	9.2	0.9485
AT4G10890			unknown protein		Lus10001812 [exp]	9.6	0.9478
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	9.8	0.9604
AT1G61170			unknown protein		Lus10011222 [exp]	10.2	0.9560

Compare expression of checked genes

Lus10017434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.