Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40290 541 / 0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) AT5G05470 496 / 8e-178 ATEIF2-A2, EIF2ALPHA ,EIF2 ALPHA eukaryotic translation initiation factor 2 alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007521 [exp] 614 / 0 AT2G40290 558 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Lus10024444 [exp] 238 / 3e-78 AT2G40290 211 / 1e-67 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072500 [exp] 551 / 0 AT2G40290 547 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Potri.010G184900 [exp] 551 / 0 AT2G40290 551 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07541 [flax] [poplar] EIF_2_alpha Eukaryotic translation initiation factor 2 alpha subunit CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017435 pacid=23140196 polypeptide=Lus10017435 locus=Lus10017435.g ID=Lus10017435.BGIv1.0 annot-version=v1.0 ATGGCGACGAATAACCTTGAGTGTCGGATGTACGAAGCGCGGTACCCTGAAGTCGACATGGCGGTGATGATTCAGGTGAAGAACATCGCCGACATGGGCG CTTACGTCTCCTTGCTCGAGTACAACAATATTGAAGGCATGATCCTGTTCTCCGAGCTGTCCCGCCGCCGGATTCGTAGTGTCACCAGCTTGATTAAGGT CGGCCGTATCGAGCCAGTGATGGTGCTTAGAGTTGACAAGGAGAAGGGGTACATTGATTTGAGTAAGAGGAGGGTTAGTGAGGAGGACATTCAAGCCTGT GAAGAGAGGTACAACAAGAGTAAGCTCGTCCACTCCATCATGCGTCATGTTGCTGAGACGCTTGAACTTGATTTGGAGGATCTGTACATCCATATTGGCT GGCCTCTTTACCGTAAATATGGCCATGCCTTCGAGGCATTCAAAATCATTGTGACCGACCCTGACTCAGTTCTTAGTACCCTTACCCGCGAAGTCAAGGA AGTTGGTCCTGATGGACAAGAGGTAACCAAGGTAGTGCCAGCTGTAACAGAGGAAGTTAAAGACTCTCTGGTGAAGAACATAAAGAGGAGAATGACTCCT CAGCCTTTGAAAATTCGAGCCGACATCGAAATGAAGTGCTTCTCTTTTGACGGCGTTCTTCATATCAAGGATGCCATGAGGAAGGCAGAGGCTGTTGGTA ATAAAGACTGCCCGGTGAAGATCAAGCTAGTTGCTCCTCCACTTTATGTGCTCACTACTCAAACACTAGACAAGGATCAAGGGATATCGGTCCTTACCAA GGCAATCACCGCATGCAGCGAATCAATCGAAGAGAAGAAAGGAAAACTTGTAGTAAAAGAGGCTCCTAGAGCAGTGAGTGAACGTGACGACAAGTTGCTG GCCGAGCACATGGCGAAGCTGAGAACCGAGAACGAGGAGATGAGCGGAGACGAGGACAGTGAGGAGGAAGAAGACACCGGTATGGGAGATGTCGATGTGG AAAACGCTGGCCCGGGAATCACAGAGTGA
AA sequence Show only first row Show all	>Lus10017435 pacid=23140196 polypeptide=Lus10017435 locus=Lus10017435.g ID=Lus10017435.BGIv1.0 annot-version=v1.0 MATNNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVTSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQAC EERYNKSKLVHSIMRHVAETLELDLEDLYIHIGWPLYRKYGHAFEAFKIIVTDPDSVLSTLTREVKEVGPDGQEVTKVVPAVTEEVKDSLVKNIKRRMTP QPLKIRADIEMKCFSFDGVLHIKDAMRKAEAVGNKDCPVKIKLVAPPLYVLTTQTLDKDQGISVLTKAITACSESIEEKKGKLVVKEAPRAVSERDDKLL AEHMAKLRTENEEMSGDEDSEEEEDTGMGDVDVENAGPGITE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	2.8	0.9714
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	3.0	0.9596
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	3.2	0.9536
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	3.2	0.9608
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10024802 [exp]	4.9	0.9593
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	10.2	0.9510
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	12.1	0.9561
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	13.0	0.9420
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	13.0	0.9570
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10002118 [exp]	13.1	0.9390

Compare expression of checked genes

Lus10017435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.