Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40280 734 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 687 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 629 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29470 617 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 603 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 603 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 486 / 5e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 485 / 4e-164 Putative methyltransferase family protein (.1) AT2G39750 480 / 3e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 475 / 1e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007520 [exp] 1123 / 0 AT2G40280 734 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040950 [exp] 934 / 0 AT2G40280 753 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 599 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 599 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 592 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 585 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 581 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 570 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 566 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185000 [exp] 797 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 600 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 598 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 595 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G017400 [exp] 588 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 582 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 580 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 487 / 4e-165 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 485 / 2e-164 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 465 / 1e-156 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017436 pacid=23140233 polypeptide=Lus10017436 locus=Lus10017436.g ID=Lus10017436.BGIv1.0 annot-version=v1.0 ATGTCGCTGGGCAAGCTGATGAGGGAGCGAACCTTCGGGCTGGCCTTCTTCCTCTTCCTATTCGTCTTCCTCGTATCCATCACTTTCTTCTTCCTCTCCA GCGGCAAGACCGTCGAGCTCCCTTACTACTTCTCCCTTGCCGATCGCTCCGACGTCCCCACCGCCACCGCCACCACAACAACAGCAGCTGCGCGTCCTCC TCCCCCGCCTCCTCTTCCTCCTTCGGAGGAGGTCACCATCTCTCCCAAGGACGCACCGGCTCTCGCGGCAAGGAAGTCCAACTTCCCTACCGTCCCGCCT CTCGACGTGACGTGGCATCTGTGCAGCGAACGGAAGCAGGGGATGGTGGATTACATCCCTTGTTTGGATAACGCGGCTGCGATTAAGAGGCTTCCGTCGA GGCGGCACATGGAGCATCGAGAGAGGCATTGCCCTAAGCCAGCGCCCGCCAGGTGTTTGATCCCTCTCCCCAAAGGATACAAGCAGCCTATGCCCTGGCC TAAGAGCAGAGATATGATATGGTACGACAATGTGCCTCATCCTAAGCTGGTAGAGTACAAGAAGAATCAGAACTGGGTCCGCAAGGAAGATGATCATTTT GTTTTCCCGGGAGGTGGGACTCAGTTCAAAGATGGAGTTGCTAGCTACGCCGACTTCATTCAGAAGACTGTACCTGCCATCCATTGGGGGAGACACATAA GGGTAGCTCTAGACGTGGGTTGCGGTGTTGCTAGCTTCGGTGGTTATTTGCTGGACAAACAAGTCCTCACCATGTCCATAGCGCCGAAAGATGAACACGA AGCTCAGATCCAATTCGCTCTCGAACGTGGAATACCGGCTTTTCTCTCTGTGATTGGGACTCAACAGCTTGTGTTTCCTGATAATTCTTTCGACCTGATA CATTGTGCCAGGTGTCGGGTTCACTGGGATGCACAGGGTGGGAAACCGCTCCTGGAGCTGAACAGGATCTTGAGGCCTGGAGGTTTCTTCGTATGGTCAG CTACACCTGTGTACCGTGACAACGAAAGAGATTCAAGTGTTTGGAAAATTATGGTAGCGTTGACGGAATCTATGTGCTGGAAGGTTGTCTCAAAGACAAT GGATTCGACAGGAATCGGACTTGTAATCTATCAGAAACCAGTGTCTCCTTCTTGCTACGAGAAACGCCCAGAAAACAACCCTCCTCTTTGTGATCAAAAC GACAAGAAAAACGTTTCGTGGTATACGCCTCTGCGAAACTGCATTTCTAGACTTCCACTCGATAAACAAGGGGGAGTCATGGGCTGGCCAGTAACATGGC CGTACAGGATCAATGCTCTGCCGGCATCCCTACCGTCAGAACCCGGGATTGTAGAAGACTACAACGCAGAAAACAGACGTTGGGCAGACCTAGTATCCAA TACTTACCTCACGAAATTCAACATAAGCTGGGGGGGTATTCGCAACGTAATGGATATGAACGCTGGTTATGGAGGGTTTGCTGCAGCACTAATTGATCTT CCTTACTGGGTCATGAATGTCGTCCCAGTCACCGAGAAAGACACCCTCCCGATAATCTTCGACAGAGGGCTGATCGGAGTCTACCACCACTGGTGCGAGT CGTTCAACACTTACCCTCGTACCTACGATCTCGTGCATGCAAGCTTCATCTTCAAATCCCTGTCAGAAAGGTGTGACCTGGTAGATGTGGGATTAGAGAT CGATCGGATAGTTCGACCGGGTGGATATTTTCTGGCTTTCGAGACAATGGAATCGATCAACAGTCTCACTGCTATACTGAAGTCGCTCCATTGGTCGGTT AAAATTCACAAAGCTCAGTACATGGTCGCCACCAAAGGTTTCTGGCGTCCCAGTTGA
AA sequence Show only first row Show all	>Lus10017436 pacid=23140233 polypeptide=Lus10017436 locus=Lus10017436.g ID=Lus10017436.BGIv1.0 annot-version=v1.0 MSLGKLMRERTFGLAFFLFLFVFLVSITFFFLSSGKTVELPYYFSLADRSDVPTATATTTTAAARPPPPPPLPPSEEVTISPKDAPALAARKSNFPTVPP LDVTWHLCSERKQGMVDYIPCLDNAAAIKRLPSRRHMEHRERHCPKPAPARCLIPLPKGYKQPMPWPKSRDMIWYDNVPHPKLVEYKKNQNWVRKEDDHF VFPGGGTQFKDGVASYADFIQKTVPAIHWGRHIRVALDVGCGVASFGGYLLDKQVLTMSIAPKDEHEAQIQFALERGIPAFLSVIGTQQLVFPDNSFDLI HCARCRVHWDAQGGKPLLELNRILRPGGFFVWSATPVYRDNERDSSVWKIMVALTESMCWKVVSKTMDSTGIGLVIYQKPVSPSCYEKRPENNPPLCDQN DKKNVSWYTPLRNCISRLPLDKQGGVMGWPVTWPYRINALPASLPSEPGIVEDYNAENRRWADLVSNTYLTKFNISWGGIRNVMDMNAGYGGFAAALIDL PYWVMNVVPVTEKDTLPIIFDRGLIGVYHHWCESFNTYPRTYDLVHASFIFKSLSERCDLVDVGLEIDRIVRPGGYFLAFETMESINSLTAILKSLHWSV KIHKAQYMVATKGFWRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	0	1
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	8.5	0.8980
					Lus10003802 [exp]	9.2	0.9119
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	9.3	0.9086
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	10.7	0.8723
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	11.0	0.8858
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	13.4	0.8818
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	13.9	0.8662
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	15.0	0.9116
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	15.2	0.8800
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10021365 [exp]	19.0	0.9065

Compare expression of checked genes

Lus10017436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.