Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05480 582 / 0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) AT3G14920 374 / 2e-121 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007518 [exp] 415 / 1e-142 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025775 [exp] 330 / 7e-105 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10017926 [exp] 330 / 2e-104 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10007519 [exp] 223 / 4e-70 AT5G05480 81 / 9e-19 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025771 [exp] 234 / 2e-68 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10035890 [exp] 146 / 8e-38 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185100 [exp] 677 / 0 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.008G072400 [exp] 675 / 0 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.011G109700 [exp] 370 / 2e-119 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12222 [flax] [poplar] PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence Show only first row Show all	>Lus10017437 pacid=23140134 polypeptide=Lus10017437 locus=Lus10017437.g ID=Lus10017437.BGIv1.0 annot-version=v1.0 ATGGATGGCATAGAGCTCTCGGGCTCATATCAAGAAGATCGGCCTACCTCTAAACTGGGCCTATCTAAGCCCAAGCTTGTTCCTCTCTATTTACCGATCA AGTCAAGTCAACCCCATCAATTGAGCAAACGAAAAATGCAATCTTTTCTCTTCCTCACTCTTCAGTCTCTCCTGTTTCTTCTCATTCGATCCACCGAGTC GTCAATCTCGCCGGACCGATTCCTCCGGCCACAACCGCCACCGTCATCTCTTTCCTCATCCCTCAAACCACTGCAATTCATCGAACTCGCACAGCCTCTG CCGTCCGATAAGCTGATCCCGCCATGTACCACCCTCCACGTCATCCACCATTCCTTCGCCGACACAATCAACCGCCCGCCGTTCTCCACCGCTTACAATC CTCCTCCGGCGTCGAAATGCCCCGTCCCTTGGTCACACGTGGCACTCGAGCTGCGCGTCACCTCCCGCGGGGACCAGTACGACCGGATCTCCGGATTGTG GCTTGGCGGCTCGGAGATTCTCCGGACCAGCACGGCGGAGCCGACGAGTGAGGGGATCTTCTGGGAAGTACGGAAGGATATCACGAAGTATGCTTCTCTT CTCTCCCAGACGAATCTCACTCTCACTATGATGCTCGAGAACATCGTTAACGACGTCTACACTGGCGTTTACCACGTCGATGTGTTTTTCAACTTTTACA GTGCTGACGCCGTTAGTTCTGCTCCGGGAGAAAAAATTAGGATTCTGGAAGAAGAAGGAAGAGGTGAGATTGAGAAGACCAGCGAATTGCCGGCTGATTT GGTGATTCCGATTTCGTCAAGCGACGGTTACGAGAAAGGATTCTGGTTCGTGATCGAAGGCGGAGAATCCGATCTACGTTCGAAGGAAGTCCGATTTCCT CTCAATACAAGGAAAGCAGTGCTGGAGCTCTACGTCTCGTTCCATGGGAATGACGAGTTCTGGTACTCGAATCCGCCGGATTCGTACATTCGAGTCAACA ATTTGACCACGGCCAGAGGCAATGGCGCTTACAGGGAAGTATTCGTCACAATCGACGGAAAGGTCATCGGATCAGAGATTCCTTTCCCTGTGGTGTTCAC CGGCGGGATTAACCCATTGTTCTGGGAACCGGTGGTGGCGATCGGCGCTTTCAATCTCCCATCATATGATTACGATTTATCGCCGGTGCTGGGCCTGGTA CTGGATGGAAAGCCTCACAAGATCGGCGTCGGAGTTAGCGACGGGATCTCGTATTGGCTAATTGACGCGAATCTGCACATCTGGTTGGACGGCGGTTCGT CGAGAGTTGAGGCGAAATCGGTCGTGTACGACAATCCAGCGTCGTATATCACTCGCGAGGAAGAGTTTCATCTCCTGGACGGATCATTCGAAATCAAGAG CAAAAGAAGAACTCTTATGATCGGATGGGTGAAGTGGAGCGGAGGCAATCACACAACCTCAGTCTCTCAAGAATTCAAATTCCGAAACATTATAAGCTTC GAAGGCAACGGTACGATCAAGACAGTCAACCAGAGAATCAAAGTGAAGAAAGAGGTCATGGTGACGAACGAATTCGATCAGCTCGTTAGTCGCGTGAAGA TCAAACGAAGATATCCGATCAAAATGTCGTCAGCAACTCTCCCCGGATCGAATCCGGATACTTATCTGATGATCACGAATGTTTCTCACGCCTTCTCGGA GAGGTACGTGAATGGCGGAGGAGGTAATAAGAGGAATGTGTATAACAACCAGGTGTCCAATGGATGGATGGAGGTGAAGGATCATGACGTTCTTAACGGA GGTTCGGTTACTAACCAGACTTTGAGTTGCAGAGACGATGAAATGGATTGCTTTGTTTGGATCATTTCCGCCGTCGACGGGAAGCTTGTGAAGAACGACA CCTCCTCTGTTTGTCCGTCTGTGTATGTTAATTGA
AA sequence Show only first row Show all	>Lus10017437 pacid=23140134 polypeptide=Lus10017437 locus=Lus10017437.g ID=Lus10017437.BGIv1.0 annot-version=v1.0 MDGIELSGSYQEDRPTSKLGLSKPKLVPLYLPIKSSQPHQLSKRKMQSFLFLTLQSLLFLLIRSTESSISPDRFLRPQPPPSSLSSSLKPLQFIELAQPL PSDKLIPPCTTLHVIHHSFADTINRPPFSTAYNPPPASKCPVPWSHVALELRVTSRGDQYDRISGLWLGGSEILRTSTAEPTSEGIFWEVRKDITKYASL LSQTNLTLTMMLENIVNDVYTGVYHVDVFFNFYSADAVSSAPGEKIRILEEEGRGEIEKTSELPADLVIPISSSDGYEKGFWFVIEGGESDLRSKEVRFP LNTRKAVLELYVSFHGNDEFWYSNPPDSYIRVNNLTTARGNGAYREVFVTIDGKVIGSEIPFPVVFTGGINPLFWEPVVAIGAFNLPSYDYDLSPVLGLV LDGKPHKIGVGVSDGISYWLIDANLHIWLDGGSSRVEAKSVVYDNPASYITREEEFHLLDGSFEIKSKRRTLMIGWVKWSGGNHTTSVSQEFKFRNIISF EGNGTIKTVNQRIKVKKEVMVTNEFDQLVSRVKIKRRYPIKMSSATLPGSNPDTYLMITNVSHAFSERYVNGGGGNKRNVYNNQVSNGWMEVKDHDVLNG GSVTNQTLSCRDDEMDCFVWIISAVDGKLVKNDTSSVCPSVYVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	0	1
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	1.7	0.8735
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	2.0	0.8513
AT2G41905			unknown protein		Lus10026313 [exp]	6.5	0.8122
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10008716 [exp]	7.9	0.7771
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	8.0	0.8341
AT1G69430			unknown protein		Lus10036796 [exp]	9.5	0.8462
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	10.7	0.8179
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	10.9	0.8121
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	16.7	0.8041
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	18.7	0.7954

Compare expression of checked genes

Lus10017437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.