Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58530 124 / 1e-34 Glutaredoxin family protein (.1) AT5G13810 105 / 2e-27 Glutaredoxin family protein (.1) AT2G41330 106 / 7e-27 Glutaredoxin family protein (.1) AT3G57070 103 / 1e-25 Glutaredoxin family protein (.1) AT5G39865 102 / 2e-25 Glutaredoxin family protein (.1) AT3G11773 90 / 1e-22 Thioredoxin superfamily protein (.1.2) AT5G01420 91 / 2e-21 Glutaredoxin family protein (.1) AT5G06470 87 / 8e-21 Glutaredoxin family protein (.1) AT3G28850 89 / 2e-20 Glutaredoxin family protein (.1) AT1G64500 83 / 1e-18 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007517 [exp] 257 / 5e-87 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10040949 [exp] 203 / 4e-66 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10009838 [exp] 187 / 1e-55 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039537 [exp] 110 / 4e-29 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 109 / 6e-29 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10001669 [exp] 105 / 8e-27 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10017335 [exp] 99 / 1e-24 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10018025 [exp] 99 / 2e-24 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10007256 [exp] 99 / 4e-24 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072200 [exp] 181 / 5e-57 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 155 / 6e-47 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 145 / 4e-43 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 114 / 1e-30 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 111 / 8e-29 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 111 / 1e-28 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 108 / 1e-28 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 108 / 1e-28 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 94 / 2e-22 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 91 / 4e-21 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10017438 pacid=23140247 polypeptide=Lus10017438 locus=Lus10017438.g ID=Lus10017438.BGIv1.0 annot-version=v1.0 ATGTACTTCATCTATGGGCTACCAAAGGACAACATGATCATCTCAATGGGGTATATATACTCTCGAGATCCCCAATATGTGAGCCCCTTCAATCTTCCAC CGCGTCCGGGTCTCCACCTCCGTCCTCCGCTACCTCCGCAAATCTCTACCTCCTCCGCCGCCTGCGGCGCCGGAGTGCGTCGTCCTCTACTTCACCAGCC TCCGAGTGGTGCGCAGGACTTACTGGTGCGCCGGACTTACGAGGACTGCCGCACTGTCAGATCGATCCTCCGCGGGATCCGCGCCCTGACGGACGAGCGA GATCTGTCCATGGACGGTAAGTACCTGGACGAGCTGCAGAAGATCCTGCCAGTTGTCACATTGCCGGTGGTGCTGATCGGCGGAAAGTGCATTGTCGGCG TGGAGCGGATCAGGGAGCTGCACGAGAGCGGAGAGCTGAAGAAGATGATTGGAGCGCTGCCGCCGGCGTCGGACGAGTGCGATCTGTGTGGAGGACTGAG ATTTCTGCTGTGTGAGCTGTGCAGTGGGAGTCACAAGATCTACTCGGAGAAGCAGGGGTTCAGGAGCTGTACGGCGTGCAATGTCAACGGGCTGATCCGC TGCCCCGATTGCTACCCGGCTGCCCGCCGGCGGATGTCGATCGCGTAG
AA sequence Show only first row Show all	>Lus10017438 pacid=23140247 polypeptide=Lus10017438 locus=Lus10017438.g ID=Lus10017438.BGIv1.0 annot-version=v1.0 MYFIYGLPKDNMIISMGYIYSRDPQYVSPFNLPPRPGLHLRPPLPPQISTSSAACGAGVRRPLLHQPPSGAQDLLVRRTYEDCRTVRSILRGIRALTDER DLSMDGKYLDELQKILPVVTLPVVLIGGKCIVGVERIRELHESGELKKMIGALPPASDECDLCGGLRFLLCELCSGSHKIYSEKQGFRSCTACNVNGLIR CPDCYPAARRRMSIA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	0	1
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	1.4	0.8486
AT1G14550			Peroxidase superfamily protein...		Lus10004218 [exp]	4.0	0.8228
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	4.1	0.8520
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10007758 [exp]	7.6	0.7837
AT1G12310			Calcium-binding EF-hand family...		Lus10024567 [exp]	8.4	0.7805
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	8.4	0.8159
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	9.8	0.8360
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	12.0	0.8086
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10017381 [exp]	13.7	0.7552
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	16.7	0.8057

Compare expression of checked genes

Lus10017438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.