Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 423 / 4e-142 Protein kinase family protein (.1.2) AT3G56050 407 / 2e-135 Protein kinase family protein (.1.2) AT4G18640 376 / 2e-121 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 375 / 6e-121 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 336 / 3e-110 Protein kinase superfamily protein (.1.2.3) AT5G07150 322 / 6e-102 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 241 / 3e-70 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 228 / 3e-65 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56890 155 / 4e-39 Protein kinase superfamily protein (.1) AT2G20300 154 / 6e-39 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007516 [exp] 1178 / 0 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031860 [exp] 589 / 0 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 454 / 2e-151 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10029228 [exp] 360 / 5e-118 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 341 / 3e-108 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 341 / 6e-108 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 341 / 5e-107 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 299 / 5e-92 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 254 / 4e-75 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185300 [exp] 716 / 0 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 503 / 4e-171 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 475 / 2e-159 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 464 / 3e-155 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.011G067400 [exp] 396 / 2e-128 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 389 / 9e-126 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 265 / 5e-79 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 253 / 2e-74 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G178050 [exp] 165 / 2e-43 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 160 / 2e-41 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017439 pacid=23140171 polypeptide=Lus10017439 locus=Lus10017439.g ID=Lus10017439.BGIv1.0 annot-version=v1.0 ATGGAAAAGTACCGCAAATTCCGTTGGTCTACAGCTCTGCTCCTCAGCTTCTTCCTCTACTGCGACTTGATTCTCTGCTCCTTCTCTCTCGAAGCCGAAG GTTTGGCTTTGTTGAAGTTCAAAGCGAGAGTGGTGAGCGATCCGTTCGGTGCTTTGGACGATTGGAAGGATGACGGTGGTGAGAACGCCGATCACTGCTC GTGGTTCGGCGTTGAATGCTCCGATGATGGAAGAGTTGTATCCCTGAACTTGAGAGATCTATGCCTGAAAGGGACTTTGGCTCCTGAGCTTGGAAAGCTC GTTAATTTAATATCCATTGTGTTGCGCAACAACTCGTTTACTGGCATAATTCCGGAAGATATTGGCGAGCTGATGGACCTAGAGGTGCTGGATCTTGGGT TCAACAACTTCAGCGGTTCGCTTCCTCCAAACCTTGGAAGCAATCGGTCATTGACGATTCTACTCTTGGACCACAATGGCGTTCTCAGCATCTTTTCGCC TGAAATTCATCAACTTATGAAGCTCTCTGAAGTTCAAGTTGATGAGACTGAACTGTATGATTCAGCAAAGGATGCATCTTGTCACAAAACCAATGATGCA GCTCAGAGGAGACTTCTACAAACAGTTGATGATCTTTTACCGAATCGGCCACGAGTAACTCTTCCTCCGAATACCCGGTTCTTCAACCCCTATGAATTCA TACCTCCCCTGCCTCCCATTTCTATAGAGCCATCTATTCCGTTCCCAAACATAACTCGTCTATTGCCTCCACCTCCCCCTGCTACCGAATCAACCCAAGA TCCAATTCCACAGCTCCCAGATGCTAACAATCAGACTTCTTCTCCAAATTTGACCGAACCTTCTTTTCCTGCACCAACCCCACCGGTTACAAGTAGTCCT AATTCAACAGTTGAAAGTTCCCGTTCAAAGAATCACGTCATTGTGCCAATTGCTGCATCGTTAGGGGGTGTTGCATTTCTTCTCTTTGCTATTGTTGGGA TATATCTCTGCAAAACCAAAAGGGCAGCTGTCAAACCGTGGGCCACTGGACTGAGTGGGCAGCTTCAGAAAGCGCTTACAACTGGTGTGCCAAAGTTGAA AAGATCCGAGCTTGAAGCAGCTTGTGAAGATTTCAGTAACGTAATTGGTTCTTCACCACTTGGTATGTTGTACAAAGGAACTTTGTCAAGTGGGGTTGAA ATAGCGGTGGCCTCCGTTGCCTTATCTGACAAGGATTGGTCAAGAAATTTGGAAGTACAGTTCGCAAAGAAGATCGAGACATTATCGAAAGTGAATCACA AGAATTTCATCAACCTTCTTGGGTATTGTGTGGAAGACGAGCCTTTCACAAGGATGTTGGTCTTCGAATATGCTCCTAACGGATCGCTCTTCGAACATTT GCATATTAAAGAATCTGAACACCTGGACTGGGCGATGCGGCTCAGAATCATGGTGGGCATGGCGTACTGCCTCGAGTACATGCACCAGCTGGACCCACCA ATCGCGCACAATAACTTAGCATCTTCATCCGTCTCTCTCACCGAAGACTACGCTGCCAAACTCTCGGATTTCAGTTTCTCAACCAACTCGACACCTTTTG AAGCATCCGAGACAGAACTCTCGGACATGCCATCGTCAAATATCTCAACCAACGTCTACAGCTTCGGCGTGCTGTTGTTCGAACTGATGACCGGTCGGGT CCCTTACTCGGTGACCAATAATAATGGATCGTTAGAAAACTGGGCATCAGACTACTTGACAGGAGACCAACGCCTCCACCGAATCGTGGACCCAACACTC AATAAGTTCGAGGCGGAGAAACTCAACTCGATAGAGGAAGTTATAAAGTCGTGCGTTCATCCCGATCCGGTACAGAGACCTACAATGGCGGTAGTTGCGT CGACGATAAGACTGATCACCGGGATAAGCCCTGAAGCTGCCAGCCCGAAACTCTCCCCTCTTTGGTGGGCAGAGCTCGAAATTTTGTCAGCTGATGGGAG CTGA
AA sequence Show only first row Show all	>Lus10017439 pacid=23140171 polypeptide=Lus10017439 locus=Lus10017439.g ID=Lus10017439.BGIv1.0 annot-version=v1.0 MEKYRKFRWSTALLLSFFLYCDLILCSFSLEAEGLALLKFKARVVSDPFGALDDWKDDGGENADHCSWFGVECSDDGRVVSLNLRDLCLKGTLAPELGKL VNLISIVLRNNSFTGIIPEDIGELMDLEVLDLGFNNFSGSLPPNLGSNRSLTILLLDHNGVLSIFSPEIHQLMKLSEVQVDETELYDSAKDASCHKTNDA AQRRLLQTVDDLLPNRPRVTLPPNTRFFNPYEFIPPLPPISIEPSIPFPNITRLLPPPPPATESTQDPIPQLPDANNQTSSPNLTEPSFPAPTPPVTSSP NSTVESSRSKNHVIVPIAASLGGVAFLLFAIVGIYLCKTKRAAVKPWATGLSGQLQKALTTGVPKLKRSELEAACEDFSNVIGSSPLGMLYKGTLSSGVE IAVASVALSDKDWSRNLEVQFAKKIETLSKVNHKNFINLLGYCVEDEPFTRMLVFEYAPNGSLFEHLHIKESEHLDWAMRLRIMVGMAYCLEYMHQLDPP IAHNNLASSSVSLTEDYAAKLSDFSFSTNSTPFEASETELSDMPSSNISTNVYSFGVLLFELMTGRVPYSVTNNNGSLENWASDYLTGDQRLHRIVDPTL NKFEAEKLNSIEEVIKSCVHPDPVQRPTMAVVASTIRLITGISPEAASPKLSPLWWAELEILSADGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	0	1
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	1.4	0.8293
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	3.5	0.8106
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	3.5	0.7570
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	4.6	0.7990
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	6.3	0.7936
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	9.8	0.7963
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	11.2	0.7631
AT4G40050			Protein of unknown function (D...		Lus10023156 [exp]	14.4	0.7519
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	16.6	0.7603
AT4G03420			Protein of unknown function (D...		Lus10033707 [exp]	19.3	0.7246

Compare expression of checked genes

Lus10017439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.