Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05520 597 / 0 Outer membrane OMP85 family protein (.1) AT3G11070 583 / 0 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007514 [exp] 957 / 0 AT5G05520 600 / 0.0 Outer membrane OMP85 family protein (.1) Lus10009835 [exp] 743 / 0 AT5G05520 625 / 0.0 Outer membrane OMP85 family protein (.1) Lus10040946 [exp] 739 / 0 AT5G05520 627 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071800 [exp] 635 / 0 AT5G05520 626 / 0.0 Outer membrane OMP85 family protein (.1) Potri.010G185600 [exp] 627 / 0 AT5G05520 651 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10017441 pacid=23140177 polypeptide=Lus10017441 locus=Lus10017441.g ID=Lus10017441.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCGACGAGGTAATGCCGGAACCGCCGCCGAGAACCCCTAGCTCCGCCACAGACGACGTCAAAAACGAGAATGCCGATTCAGAAATCGACG GAGAACCCGAACTGCGTCGTCGAACGGAACAGGAGAAGCTCGAGGGCCTATTCCGTCGGATGCAGATGCAGAATGTTCCACTTCGAGTCCACGATGTGAT CATCAAGGGGAATGCGAGGACCAAAGATTACCTAATCGAAGCGGAGATGGCACTGCTTAAGAACTGCACCACTATGCAGGAGATTATCATGCTCTCCGGA GCTGTCAATTCGAGGCTGCAAGCCTTGCAGGTATTCGATTCTGTCAAGTTCACGCTCGAAACTGGCCCTCCGGAGCTCCCAGACACTTGCAACGTCTTGG TGGAGGTTGAAGAGGCCCAAACCCGCCTTTCTGGCGAAGTTGGAGCTTACACCAAGGCCGAGGCTGGATCCTCTACTCTTGAAGGAACAATCAAGTACAA GAACATATTTGGCCATGGCGATCTATGGGACGGCTCTTTTGCATATGGTTGGGACCATATGGCAGAGGTAAGTGCCGGTGTGCATGTTCCGAGATTCATA GGATCTTCGATTCCTATGAACGTCCGTGCATTCCAGCAATCCCAAGATTTGCAGAAGTTCTCTTCATTCAAAGAGAGGTCCTTGGGCCTCTCTGTTGACC TATTCTCTTCGGGGAACCATGACCTGGCTTACGACCTTGCGTGGCGTAACTTGACGGATCCTTCGCAAATGGCATCCAGGTCAGTAAGGAGGCAGCTTGG CCACAGTTTACTCTCTTCCTTGAAATATACATTCAAACTTGATAGGAGAGATTCAACTGTCCGGCCACTTAGTGGATATGCTTTCGCTGCTACCTCTCAA ATTGCTGGGCTTGCACCAGATAGTCGTTTCTTGCGCTTCGTACGCCAGGAGCTCGATCTTCGCTGTGCAATCCCTCTCAGAATCCTCAACACCGCACTAA ATGTGGGGATCTCGACCGGCGTAGTCTTCCCATGGGGTGATAATGCATCAAACACACCTTCGCCACTCCCCGATAGGTTCTTCTTAGGTGGCAATTCATC TCCAGTTTGCGGTCTTGGTGGCCCAACAACAGTTTGGGGATATAGAACCAGAGGGCTCGGCCCTACAGAGCCTCGAAGGGAACCGAAAACCAATCCCACT GCTACACCTGAAGTCGATTATCTCGGTGGAGATCTCGCTGTGACTGCTTTCGCCGATCTCTCATTCGATTTCCCGCTGAAATGGCTTCGAGAGAGAGGCA TTCACGGACATATATTCGCGTCCACCGGAAATCTCGAGAAGCTGACGCAAAACGCGTACAAAAGTTTCACTCTGCAGAAGTTTGCGTCTTCGTTTCGAAC CTCGGTGGGCGCTGGGATCGTTGTTCCGATGCAACCGTTGCGTCTCGAGGTGAACTACTACTGCATGTTGAAGAAATTCGCACACGACCAAGGGAGGCCA AAGTTTGGGGTGACCTTCTCTATGTAG
AA sequence Show only first row Show all	>Lus10017441 pacid=23140177 polypeptide=Lus10017441 locus=Lus10017441.g ID=Lus10017441.BGIv1.0 annot-version=v1.0 MATPDEVMPEPPPRTPSSATDDVKNENADSEIDGEPELRRRTEQEKLEGLFRRMQMQNVPLRVHDVIIKGNARTKDYLIEAEMALLKNCTTMQEIIMLSG AVNSRLQALQVFDSVKFTLETGPPELPDTCNVLVEVEEAQTRLSGEVGAYTKAEAGSSTLEGTIKYKNIFGHGDLWDGSFAYGWDHMAEVSAGVHVPRFI GSSIPMNVRAFQQSQDLQKFSSFKERSLGLSVDLFSSGNHDLAYDLAWRNLTDPSQMASRSVRRQLGHSLLSSLKYTFKLDRRDSTVRPLSGYAFAATSQ IAGLAPDSRFLRFVRQELDLRCAIPLRILNTALNVGISTGVVFPWGDNASNTPSPLPDRFFLGGNSSPVCGLGGPTTVWGYRTRGLGPTEPRREPKTNPT ATPEVDYLGGDLAVTAFADLSFDFPLKWLRERGIHGHIFASTGNLEKLTQNAYKSFTLQKFASSFRTSVGAGIVVPMQPLRLEVNYYCMLKKFAHDQGRP KFGVTFSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05520			Outer membrane OMP85 family pr...		Lus10017441 [exp]	0	1
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	3.3	0.9397
AT5G41190			unknown protein		Lus10001487 [exp]	3.3	0.9539
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	4.9	0.9444
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	8.5	0.9472
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	8.8	0.9495
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	9.5	0.9439
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	9.7	0.9326
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	9.8	0.9340
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	10.4	0.9327
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	13.0	0.9353

Compare expression of checked genes

Lus10017441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.