Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56040 1026 / 0 UGP3 UDP-glucose pyrophosphorylase 3 (.1) AT2G35020 50 / 8e-06 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT1G31070 44 / 0.0004 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007512 [exp] 1542 / 0 AT3G56040 1101 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Lus10028658 [exp] 50 / 8e-06 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1) Lus10000971 [exp] 48 / 4e-05 AT5G52560 1004 / 0.0 UDP-sugar pyrophosphorylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185800 [exp] 1155 / 0 AT3G56040 1150 / 0.0 UDP-glucose pyrophosphorylase 3 (.1) Potri.002G077400 [exp] 54 / 5e-07 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017443 pacid=23140187 polypeptide=Lus10017443 locus=Lus10017443.g ID=Lus10017443.BGIv1.0 annot-version=v1.0 ATGGCGACGGGCTCCGGAGCAGGCAACGCCTCCCTGCTTCACTTCCCGGACTCCAGGCTTCTTGCATTACCTCCTTCATCTACAAGCTCACTTCTTTTCA GGAGACCTGCAACTACTACTATTACTTCTCTTTCAATATGCTCTCCGCAGCAGGAGCAGCAAGGATTCCGGATTACCCGCGTCTCCACCGCGACGGTGGA GTGCTCTCCTTCAGCTCCTGACGACTTCGATTTCCAGCGGGAGATTTCTCGGCTCAGGTCTCTCCGGTCCAGGCTGGCGGATTGCGGGACTCTCCAAAGG AAGCTGCTTGTGCTGCAGAGTGATTCCTTGGTGAAGCGATTCTTCGAGTGCAGAGGGAATCGGATTATGGAATTGCTTGATTTGGGTTCCGAGGAATTGT TCCTGCTGAAATGTTTGGTTGCTGCTGGTCAGGAGCATGTATTTGGATTGGAAAGCGAGGCGATGATGGCGGATTTTAGTAATAGTGATTCTGGGAGAGG GAGAGCTTCTTTGAAGACAGCGCTGTATTCTTTGGCGGAGATGATCGAGAAGTTTGACTTGGGTCACAACGGTAAACGCCCGTCGTCGGAGCATAATGGC CACGCCGGGGGAAAGAAGGAAGTTGAGGATTTTAAATTGTTATTGAAGAATTTGAAGGAGATTGAGAAGTTCTACGATTGCATTGGAGGCATCATTGGAT ACGAGATAATGGTGCTGGAGCTACTTGCTCACTCAGCTTGTGAAAATCAAACGAAAAACTGGTCTCAACATATACATGACACCATGAATTGCCAGTTTTT GGAAATCCATGCCCCTAGTGGACTTGATCTTTCGAAAGATATAGAGTATGCATCTCAAGCAGCTATGTGGGGAATTGAGGGTTTGCCAGACCTTGGAGAA ATTTATCCCCTGGGCGGCTCTGCTGATCGTCTAGGTTTGGTAGATCCTGACACAGGCGAATGCCTTCCGGCTGCTATGCTTCCTTATTGCGGCCGGACTT TGTTGGAAGGCCTGATTAGAGATGTTCAGGCTAGAGAGTTCTTGTACTTCAAGCTCTATGGAAAGCAGTGCATCACACCAGTTGCAATCATGACAAGCCC AGCTAAGAACAACCATGAGCGTGTCACTTCTCTTTGTAAAAGACTCGGGTGGTTTGGAAGAGGTCGTTCCAATTTCAAACTCTTCGAACAGCCTCTTGTT CCTGCTGTTAGTGCTGAAGATGGGAAGTGGCTGGTTGGGAAGCCATTTTCACCTGTATCCAAGCCTGGTGGCCATGGTGTGATTTGGAAACTTGCTTATG ATAATGGCATCTTCCAATGGTTTTATGATCACGGGAGGAAAGGTGCTACTGTGCGGCAAGTCAGTAATGTCGTGGCTGCCACAGACTTGACGCTCTTAGC ACTGGCTGGGATGGGCCTCCGTCATGGTAAGAAACTAGGATTTGCATCTTGTAAGCGAACTTCGGGGGCTACAGAAGGAATCAACGTCCTTGTTGAGAAG AAGGATCTTAATGGAAAATGGGCTTATGGTTTATCCTGCATTGAATATACCGAGTTCGACAAGTATGGGATAACGAATCAGCCTTTTTCTTCAAACAGAT TGCAGGGGTTCCCTGCAAACACAAACATTATGTATGTGGACTTACCTTCTATAGAGTCAGTAGCATCGAGCAATGATGAAAAATGCTTACCAGGCATAGT ACTTAATACAAGGAAACAAATTCAATATGAGGACCAATGGGGAAACCATCACAGTGTCTCTGGTGGTCGGCTAGAATGCACAATGCAAAATATTGCGGAC AATTTTTTGAATACATATTCTTCAAGATACCAGGGTGTGGGAGATGAGTTGGATACATTCATTGTCTATAACGAGCGTAGAAGGGTCACATCATCGGCTA AGAAGAAGCAAAGCCATGCAGGCACTTCTTTGCACCAGACTCCGGATGGTGCATTGTTGGATACCTTACGGAATGCCTATGATCTTCTCTCAGGGTGTGA TATTGAACTCCCTGAGATCGAAGGTAATGACAAGTATGTTAATTCTGTTCCGCCATTTCTGATACTGCTCCATCCAGCTCTTGGTCCTCTTTGGGAGGTC ACGAGACAGAAGTTTACCAAAGGGTCAATATCAAACGGCTCCGAGTTGCAAATTGAGGTTGCTGAGTTTTTGTGGAAGAACGTGCAGCTTAACGGGAGCT TGACAATTATTGCTGAAAACATCATGGGCTCAACCAGGATGGATGCACATGGCGAGCCAATGCTGCATTACGGTCGCAGGTGTGGAAGATGTAGGTTGGA AAATGTAAGCATTCGTAACGAAGGGATTGACTGGAGTTCCTCAGACAATATATATTGGAAACATAACGTGCGACGGATCGAGGAGTTTAAGGTTGTACTT TATGGAAACTCCGAATTCGAGGCCTCCGACGTGACCATACAGGGAAATCATGTTTTCGAAGTTCCAGACGGCCACAAGATGAAGGTAAGTTCAGGAGTTT CAGGCTTGGAAGTTGAGCTCAACCCTATCGAACCTAATAAGATTGATAGTGGAAGCTGGTACTGGAACTATAAGGTACAAGGAACACATATCTTACTGGA CTTGGTACAGTGA
AA sequence Show only first row Show all	>Lus10017443 pacid=23140187 polypeptide=Lus10017443 locus=Lus10017443.g ID=Lus10017443.BGIv1.0 annot-version=v1.0 MATGSGAGNASLLHFPDSRLLALPPSSTSSLLFRRPATTTITSLSICSPQQEQQGFRITRVSTATVECSPSAPDDFDFQREISRLRSLRSRLADCGTLQR KLLVLQSDSLVKRFFECRGNRIMELLDLGSEELFLLKCLVAAGQEHVFGLESEAMMADFSNSDSGRGRASLKTALYSLAEMIEKFDLGHNGKRPSSEHNG HAGGKKEVEDFKLLLKNLKEIEKFYDCIGGIIGYEIMVLELLAHSACENQTKNWSQHIHDTMNCQFLEIHAPSGLDLSKDIEYASQAAMWGIEGLPDLGE IYPLGGSADRLGLVDPDTGECLPAAMLPYCGRTLLEGLIRDVQAREFLYFKLYGKQCITPVAIMTSPAKNNHERVTSLCKRLGWFGRGRSNFKLFEQPLV PAVSAEDGKWLVGKPFSPVSKPGGHGVIWKLAYDNGIFQWFYDHGRKGATVRQVSNVVAATDLTLLALAGMGLRHGKKLGFASCKRTSGATEGINVLVEK KDLNGKWAYGLSCIEYTEFDKYGITNQPFSSNRLQGFPANTNIMYVDLPSIESVASSNDEKCLPGIVLNTRKQIQYEDQWGNHHSVSGGRLECTMQNIAD NFLNTYSSRYQGVGDELDTFIVYNERRRVTSSAKKKQSHAGTSLHQTPDGALLDTLRNAYDLLSGCDIELPEIEGNDKYVNSVPPFLILLHPALGPLWEV TRQKFTKGSISNGSELQIEVAEFLWKNVQLNGSLTIIAENIMGSTRMDAHGEPMLHYGRRCGRCRLENVSIRNEGIDWSSSDNIYWKHNVRRIEEFKVVL YGNSEFEASDVTIQGNHVFEVPDGHKMKVSSGVSGLEVELNPIEPNKIDSGSWYWNYKVQGTHILLDLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10017443 [exp]	0	1
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	5.3	0.8869
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	7.1	0.8963
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	11.2	0.8862
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	12.8	0.8822
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	17.3	0.8779
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	18.4	0.8835
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	24.5	0.8705
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	25.5	0.8664
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	27.6	0.8790
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	30.4	0.8441

Compare expression of checked genes

Lus10017443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.