Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46510 357 / 4e-114 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G29340 351 / 3e-111 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 329 / 2e-103 ARM repeat superfamily protein (.1) AT5G42340 286 / 2e-87 PUB15 Plant U-Box 15 (.1) AT3G54850 281 / 1e-85 ATPUB14 plant U-box 14 (.1) AT1G23030 279 / 7e-85 PUB11 ARM repeat superfamily protein (.1) AT1G71020 275 / 2e-83 ARM repeat superfamily protein (.1.2) AT2G28830 277 / 2e-81 AtPUB12 PLANT U-BOX 12 (.1) AT1G60190 271 / 2e-81 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT5G67340 236 / 5e-68 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007511 [exp] 1242 / 0 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 378 / 2e-121 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10006090 [exp] 369 / 2e-118 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 367 / 8e-118 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10040834 [exp] 338 / 5e-107 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 337 / 1e-106 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 337 / 4e-106 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 308 / 4e-95 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10043471 [exp] 293 / 4e-90 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071600 [exp] 917 / 0 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G185900 [exp] 914 / 0 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.011G071400 [exp] 373 / 1e-119 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.009G029600 [exp] 362 / 6e-116 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G134000 [exp] 355 / 3e-113 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.004G061800 [exp] 356 / 4e-113 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.001G238500 [exp] 343 / 5e-109 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G107600 [exp] 340 / 1e-107 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 336 / 1e-106 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.015G074200 [exp] 337 / 2e-106 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10017444 pacid=23140214 polypeptide=Lus10017444 locus=Lus10017444.g ID=Lus10017444.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGAATTCTAAATCCTGCTGCAATTCTAAATCCTTCTTCAATCATGATTTCTTCTGGCTTTTTGCCTACAGGAACACTGGTGGAATCCATAA TCCACCTCTCCAATGAGGTCATATCAATGGAGAAGGTTCCTTCAGTCCAGTCCAAGAATGTCTCCACTGTGATTCGAAGAATCAAGCTTTTATCGTCACT GTTCGAGGATATCCAGGATGCCAACACACCGCTCCCTCCATCTTCGATTCTGTGTCTCACGGAGCTTTTTTCGGTCATCAGAAAGGTCAAGCTTTTGATC CAGGAATGCACAGAAGGGAGCTCTCTGTGGTTGTTGATTCAGACCGAAATGTTGTCAAATCAGTTCCATGTCTTGACCAAGGAAATGGGTCGGGCGCTCG ATATCTTGCCGTTGAGTCTGATGAATTTGATTGCTGACACGAGGGAGCAAGTCGAGTTGCTTCACAGGCAAGCGAAGAGAGTTGATGCTTTCTTGGATCC TAAGGAAGTTGAGAGGAAGGAGAGGGTTTTGTGTCTTATGGCTAGGCATAATGATAGGGGGAACAGTAGGAACAACAAGATTGATTTTGGGGAAGTTAAG GATGTTTTCGACAGGATCGGGCTGAGGACACCGCTCGATTTCGAGGAGGAGATTTCGAAACTGGAAGGGGAAGCTCAGCGACAGGCAGGAACCGGAGGGC TGATCGTGGTTTCCAACATAAACAATATGATCTCTCTTCTGACATATTCAAAGGCAACGGTGTTTCTTGGCGGAGAAGAAAGGGTTTTCCTTCCCAAAGA GGAAACGTTTTCAACAAGGCAACAACTTTCATCATCTCCGAACATTCCGGATGAATTCAAATGCCCGATTTCTCTGGATCTGATGAGGGATCCGGTGATT GTAGCTTCCGGTCACACTTATGACCGAAGCTCCATTGCTCAGTGGATCAACTCAGGTCACCACACGTGTCCGAAAAGCGGGCAGAGACTTATCCACATGG CTCTAATCCCTAATTATGCACTCAAGAGCTTAGTTCATCAATGGTGCCAAGAGAACAACATCCCACTAGTTGATGACTCTTCTCCATCTTCTTCCGAAAA TGAAACTCGCCAGTACGATACCGGGAAGAAGACAGCCGTTGATCATATCTCAGCCACAAAAGCAGCAGTGGATGCTGTCAAAATGACAGCAGAGTTTCTT GTGGGGAAACTAGCAATGGGATCTCCAGAGGTTCAGAGGCAGGCGGCTTACGAGCTGAGACTACTCGCGAAAACCGGGATGGACAATCGGAGGATCATCG CAGAGGCAGGAGCGATTCCCTTTCTCGTATCAATACTACACTCGAACGATTCGAGAATCCAAGAGAATGCGGTAACCGCATTGCTGAATCTCTCCATCTT GGAGAACAACAAAATCCTTATAATGGCGGCAGGAGCAGTCGAGAATATAATATCAGTGCTCGAATCGGGGAAAACAATGGAAGCGAGGGAGAATGCAGCG GCAGCGATCTTCAGTCTCTCGGTGATCGACGATTACAAAGTAATAATCGGAGAAAAACCACGAGTGATTCCGGCTTTGCTCAGATTGCTTAGAGAAGGAA CCACAGCTGGGAAAAGAGATGCTGCAAGTGCATTGTTTAACCTAGCTGTTTACGTGTCGAACAAGGCAGGGATCGTTCTTGCCGGTACGGTACCGTTGCT GGTCGAGCTTCTGATGGATGACAAGGCGGGGATCACTGACGATGCGCTGGCGATTCTGGCTTTGCTGATTGGTTGCTCGGAAGGGTTGGAAGAGATCAGG AAGAGTAGGATTCTGGTGCCTTTGCTGATTGATCTGCTGAGATTCGGATCGGGGAAAGGGAAAGAGAATTCGATAACTCTGCTTTTGGGACTGTGTAAAG ATGGAGGGCAAGAGGTTGCTAGAAGGCTGCTGATAAACCCTAGAAGCATTCCTTCTCGGTACCGTTTCTGGTCGAGCTTCTGA
AA sequence Show only first row Show all	>Lus10017444 pacid=23140214 polypeptide=Lus10017444 locus=Lus10017444.g ID=Lus10017444.BGIv1.0 annot-version=v1.0 MEAGILNPAAILNPSSIMISSGFLPTGTLVESIIHLSNEVISMEKVPSVQSKNVSTVIRRIKLLSSLFEDIQDANTPLPPSSILCLTELFSVIRKVKLLI QECTEGSSLWLLIQTEMLSNQFHVLTKEMGRALDILPLSLMNLIADTREQVELLHRQAKRVDAFLDPKEVERKERVLCLMARHNDRGNSRNNKIDFGEVK DVFDRIGLRTPLDFEEEISKLEGEAQRQAGTGGLIVVSNINNMISLLTYSKATVFLGGEERVFLPKEETFSTRQQLSSSPNIPDEFKCPISLDLMRDPVI VASGHTYDRSSIAQWINSGHHTCPKSGQRLIHMALIPNYALKSLVHQWCQENNIPLVDDSSPSSSENETRQYDTGKKTAVDHISATKAAVDAVKMTAEFL VGKLAMGSPEVQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVSILHSNDSRIQENAVTALLNLSILENNKILIMAAGAVENIISVLESGKTMEARENAA AAIFSLSVIDDYKVIIGEKPRVIPALLRLLREGTTAGKRDAASALFNLAVYVSNKAGIVLAGTVPLLVELLMDDKAGITDDALAILALLIGCSEGLEEIR KSRILVPLLIDLLRFGSGKGKENSITLLLGLCKDGGQEVARRLLINPRSIPSRYRFWSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	0	1
AT5G23160			unknown protein		Lus10010194 [exp]	1.0	0.9619
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	1.7	0.9366
					Lus10012067 [exp]	3.2	0.9314
AT1G71910			unknown protein		Lus10016934 [exp]	3.3	0.9213
					Lus10041112 [exp]	4.2	0.9227
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	6.6	0.9369
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	8.4	0.9268
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014038 [exp]	17.3	0.9054
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	18.5	0.9229
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	20.5	0.9191

Compare expression of checked genes

Lus10017444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.