Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 1120 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 582 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 580 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 579 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 571 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 562 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 542 / 0 MEF22 mitochondrial editing factor 22 (.1) AT3G22690 528 / 6e-176 unknown protein AT2G29760 520 / 4e-174 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 522 / 3e-173 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028837 [exp] 846 / 0 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 597 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 579 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035815 [exp] 577 / 0 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 574 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 570 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 562 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 561 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 558 / 0 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 1297 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 616 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 606 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G181800 [exp] 600 / 0 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 592 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 580 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G044700 [exp] 579 / 0 AT3G22690 582 / 0.0 unknown protein Potri.005G215500 [exp] 564 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 563 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 562 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017446 pacid=23163180 polypeptide=Lus10017446 locus=Lus10017446.g ID=Lus10017446.BGIv1.0 annot-version=v1.0 ATGAGCTCGAAGCTCGTCGTTCCTCCTCTTCCCATCAACGCCGCAATCACCAAAAAGCACCTTCCTCCATTACCCACCTCCGCTTCTTCTTCATCCACAT CTGTTTCCCACCACTCTCTTTCACAGAGAGTCCACATCCCGTCTCACATCTACAACCACCCAGCCGCCCTTCTCCTGGAGCTCTGCACTTCTCCGGCAGA GCTGCACCGAATCCTCCCTCTCGTCATCAAGAGCGGCCTCTACGGAGAACACCTCTTCCAGACCAAGTTCGTCAGCCTCTTCTGCAGCTACGGATGCTTG ACCGAGGCAGCTCGCGTATTTGAGCCGATTGAGCACAACAAGGTGGATGCTTTATACCACACCATGCTTAAAGGCTATGTAAATCATTCGTCTGTGGATA CTGCATTTTCGTTTTTCACTAGGATGAGGCGCGACGGAGTTGTTCCCGTTGTGTACAATTTCGCGTATTTGTTGAAGCTCTGTGGGGATAATGCGGACCT TAAAAGGGGGAAGGAGATTCACGGGCTGCTGATTACTAGTGGGTTCTCGTGGAATTTGTTTGCGACGACTGGGGTTGTGAATTTGTATGCGAAATGTAGG CAGATTGACAGTGCGCATAAGATGTTCGATAGAATGTCTGAGAGAGACTTGGTGTCTTGGAATACTATCGTTTCTGGGTATGCTCAGAATGGAGTTGCGA GAGTGGCATTGGAGTTGGTTTCCAAGATGTTTGAGGACGGGCAGAGGCCAGATTCGATCACCATTGTTTCTGTTTTACCTGCAGCTGCTGATTTCGGGTC ATTGAAGATGGGTAAGTCGATTCACGGATATGCTATTCGGGCAGGATTTGACGGGCTTGTGAATGTCTCTACTGCTTTTGTGGATATGTATTCGAAATGT AAAGATGTGGGAACGGCGAGGGTGATTTTTGAAAGGATGAAACGTAGGAGTGTTGTTTCATGGAACTCAATGATTGATGGGTATGTAGAGAGTGGGAATC CTGAGGAAGCAATGATGATATTCCAGAAAATGATGAAAGAAGGGATTCAACCAACGAATGTCACCGTTATGCAAGCTTTACATGCATGTGCTGATTTGGG TGACCTTGAAAGGGGGAAATTTGTTCACAAGCTGGTAGATGAATTGAAACTCGGTTCGGATGTTTCAGTAATGAACTCCTTGATTTCTATGTATTCCAAG TGCAAGAGGGTCGACCTTGCTTTGAACATTTTCGAGAAGTTACAGAAGAGAACTACTGTATCATGGAATGCTATGATACTAGGTTATGCCCAAAATGGAT GCGTCAATGAGGCTTTAAATTCCTTCTGCGCAATGCAGTCCCAGAACATAAAGCCGGATTCTTTCACAATGGTCAGTGTGATTCCAGCTCTCGCGGAGTT GTCGATTCCTCGACAAGCAAAGTGGATTCACGGGCTTGTAGTGAGACGGTTTCTGGACAAGAATGTTTATGTGATGACAGCTCTTGTGGACATGTACGCA AAATGCGGAGCCATTCATACTGCAAGAAGGCTCTTCGACATGATGGATTCGAGGCATGTGATTACTTGGAATGCCATGATAGATGGGTATGGAGTTCATG GACATGGACGTGCTGCTGTAGATTTGTTCATGGATATGCAAAAGGGAGATATTAAGCCAAATCATATAACATTCCTGTGTATTCTATCAGCTTGCAGCCA CTCGGGTTTAGTGGACGAAGGTATGCGATTCTTCGATAGCATGAAGAAAGATTACGCTCTAGAGCCCGCAATGGACCATTATGGAGCAGTGGTTGACCTT CTTGGTCGAGCTGGCCGGTTAAAAGAAGCATGGGATTTCATCAAAAAGATGCCTGTTGAACCAGAGATTCAAGTCTACGGGGCAATGCTGGGAGCTTGTA AAATCCACAAGAACGTCGAATTTGCAGAAGAAGCAGCGGAGAAGCTCTTCGAATTGAATCCGGAAGAGGGTGGCTACCATGTACTTCTAGCGAACATCTA CGCCACGTCATCGATGTGGAAGAAAGTAGCGGAAGTGAGAGCGACAATGCAGAAGAGAGGGCTTCAGAAAACTCCAGGGTGCAGTTTGGTGGAGCTGAGG AATGAAGTCCACAGCTTCTACTCGGGGAGCACTGAACACCCGCAGTCCAGAGAAATCTACGCTTACCTCGAGAAGCTCGTTGGTAAGATCAAAGCGTCCG GTTACGTACCGGAGACAAATTCGATCCACGATGTGGAGGATCACGTGAAGGAGCAGTGGCTGAACACTCACAGCGAGAAGTTGGCGATTGCTTTTGGGCT GCTGAACACGAGTCCGGGTACTACCATACACATCAGAAAGAACCTGAGGGTTTGCGGGGATTGTCATACTGCGACAAAGTATATTTCGTTGGTGACCGAA AGGGAGATCGTCGTACGGGATATGCATAGGTTTCACCATTTTAAGGATGGAGTTTGTTCATGTGGTGATTATTGGTAG
AA sequence Show only first row Show all	>Lus10017446 pacid=23163180 polypeptide=Lus10017446 locus=Lus10017446.g ID=Lus10017446.BGIv1.0 annot-version=v1.0 MSSKLVVPPLPINAAITKKHLPPLPTSASSSSTSVSHHSLSQRVHIPSHIYNHPAALLLELCTSPAELHRILPLVIKSGLYGEHLFQTKFVSLFCSYGCL TEAARVFEPIEHNKVDALYHTMLKGYVNHSSVDTAFSFFTRMRRDGVVPVVYNFAYLLKLCGDNADLKRGKEIHGLLITSGFSWNLFATTGVVNLYAKCR QIDSAHKMFDRMSERDLVSWNTIVSGYAQNGVARVALELVSKMFEDGQRPDSITIVSVLPAAADFGSLKMGKSIHGYAIRAGFDGLVNVSTAFVDMYSKC KDVGTARVIFERMKRRSVVSWNSMIDGYVESGNPEEAMMIFQKMMKEGIQPTNVTVMQALHACADLGDLERGKFVHKLVDELKLGSDVSVMNSLISMYSK CKRVDLALNIFEKLQKRTTVSWNAMILGYAQNGCVNEALNSFCAMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVVRRFLDKNVYVMTALVDMYA KCGAIHTARRLFDMMDSRHVITWNAMIDGYGVHGHGRAAVDLFMDMQKGDIKPNHITFLCILSACSHSGLVDEGMRFFDSMKKDYALEPAMDHYGAVVDL LGRAGRLKEAWDFIKKMPVEPEIQVYGAMLGACKIHKNVEFAEEAAEKLFELNPEEGGYHVLLANIYATSSMWKKVAEVRATMQKRGLQKTPGCSLVELR NEVHSFYSGSTEHPQSREIYAYLEKLVGKIKASGYVPETNSIHDVEDHVKEQWLNTHSEKLAIAFGLLNTSPGTTIHIRKNLRVCGDCHTATKYISLVTE REIVVRDMHRFHHFKDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	0	1
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031837 [exp]	6.3	0.8794
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	7.9	0.9090
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	9.2	0.8833
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	11.9	0.8918
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	21.1	0.8778
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	21.9	0.8782
AT3G19810			Protein of unknown function (D...		Lus10017411 [exp]	29.2	0.7948
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	29.5	0.8766
AT5G51010			Rubredoxin-like superfamily pr...		Lus10027889 [exp]	33.0	0.7988
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	35.3	0.8745

Compare expression of checked genes

Lus10017446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.