Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04490 330 / 3e-113 VTE5 vitamin E pathway gene 5 (.1) AT5G58560 196 / 7e-61 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028835 [exp] 540 / 0 AT5G04490 280 / 1e-93 vitamin E pathway gene 5 (.1) Lus10031858 [exp] 191 / 1e-59 AT5G58560 341 / 1e-118 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10031288 [exp] 182 / 4e-55 AT5G58560 321 / 1e-109 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232600 [exp] 373 / 2e-130 AT5G04490 320 / 2e-109 vitamin E pathway gene 5 (.1) Potri.009G074800 [exp] 215 / 3e-68 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.001G279900 [exp] 202 / 5e-64 AT5G58560 333 / 8e-116 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.009G074700 [exp] 199 / 5e-63 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.008G029000 [exp] 132 / 5e-38 AT5G04490 117 / 7e-33 vitamin E pathway gene 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10017447 pacid=23163209 polypeptide=Lus10017447 locus=Lus10017447.g ID=Lus10017447.BGIv1.0 annot-version=v1.0 ATGGCTTCGTCGTCGTCCTTCATCGTCGCAATCCCCCGCTTCTACGCTACTCAATCGTCTTTACTATATTTCTCTTCTTTATGTTCGCCGAATCGATTAA TATTCCCTCTCCGCCGCCCGCCGGCCTCTCCGTTATTCCTCCGATCCAAGGGCTCTTATCTCCTTCGCCTTCCTCAAGTCGCCATTGGAGTTGGATCTGA TCTAATTCAAGACGTGGGAGCCACTGCCGCCGTGCTCGCCGGCGCCTACGGTCTCGTGCGATCTTTCGATGCCCTGACTCGGCGACAGATTATCCAGCAG AAATTAAGCAGAAAGCTGGTTCATGTTCTTTCTGGGTTACTATTCGTCATTTCTTGGCCAATTTTCAGCACCTCCACAGAGGCGCGCTACTTTGCGGCAA TAGTGCCTCTCATCAATTGCGTGAGGCTTGTTATCCACGGTTGTTCGTTGGCTACTGATGAATCGCTAATCAAGTCAGTTACCAGAGAAGGAAAGCCAGA GGAGTTGCTGAGAGGTCCTTTATACTATGTTCTCGCATTGATCGTATGCACTCTCGTCTTTTGGCGCGAATCTCCAGTTGGAATCATCTCTGTGGCAATG ATGTGCGGTGGGGATGGTATGGCTGATATTATAGGAAGAAGATTTGGGTCAATGAAACTCCCATACAATCAGGAGAAGAGCTGGGTCGGTAGTCTGTCCA TGGTCTTGTGCGGCTTCTTCATCTCTACTGGAATGCTGTACTACTATTCAAAGCTGGGATACTTTCAAATGGACTGGAGTGTGGCAATTCCCGGGGTTGC TCTGATCGCCTTGACAGCAACAGCAATGGAGTCTCTTCCGGTAACGAATGTAGTCGATGACAATATATCGGTTCCTTTAGTTAGCATGATATCTGCATGT ATACTTGAGTTTTGGTTAGTAGCAGCTTAG
AA sequence Show only first row Show all	>Lus10017447 pacid=23163209 polypeptide=Lus10017447 locus=Lus10017447.g ID=Lus10017447.BGIv1.0 annot-version=v1.0 MASSSSFIVAIPRFYATQSSLLYFSSLCSPNRLIFPLRRPPASPLFLRSKGSYLLRLPQVAIGVGSDLIQDVGATAAVLAGAYGLVRSFDALTRRQIIQQ KLSRKLVHVLSGLLFVISWPIFSTSTEARYFAAIVPLINCVRLVIHGCSLATDESLIKSVTREGKPEELLRGPLYYVLALIVCTLVFWRESPVGIISVAM MCGGDGMADIIGRRFGSMKLPYNQEKSWVGSLSMVLCGFFISTGMLYYYSKLGYFQMDWSVAIPGVALIALTATAMESLPVTNVVDDNISVPLVSMISAC ILEFWLVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10017447 [exp]	0	1
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10036259 [exp]	3.5	0.7694
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	8.5	0.7828
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	9.8	0.8078
AT1G12650			unknown protein		Lus10017837 [exp]	11.0	0.7977
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	13.2	0.7856
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	15.5	0.7666
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	32.7	0.7918
AT1G22140			unknown protein		Lus10025627 [exp]	33.6	0.7775
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	37.5	0.7429
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	51.1	0.7270

Compare expression of checked genes

Lus10017447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.