Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10540 809 / 0 3-phosphoinositide-dependent protein kinase (.1) AT5G04510 806 / 0 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT3G08720 224 / 3e-67 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 219 / 2e-65 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G58140 196 / 2e-54 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G48490 193 / 7e-53 Protein kinase superfamily protein (.1.2.3) AT1G45160 190 / 5e-52 Protein kinase superfamily protein (.1.2) AT2G20470 185 / 7e-52 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G34650 181 / 2e-51 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT1G30640 182 / 6e-51 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028834 [exp] 960 / 0 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10038647 [exp] 884 / 0 AT3G10540 813 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10037921 [exp] 743 / 0 AT3G10540 694 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10025213 [exp] 213 / 8e-61 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 201 / 8e-58 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10027196 [exp] 196 / 7e-54 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10026572 [exp] 195 / 8e-54 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036653 [exp] 191 / 1e-53 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10005470 [exp] 193 / 3e-53 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G028800 [exp] 833 / 0 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.010G232800 [exp] 827 / 0 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.006G109600 [exp] 207 / 5e-61 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 204 / 5e-60 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 203 / 2e-59 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.002G263000 [exp] 197 / 3e-54 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G342000 [exp] 195 / 7e-54 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 191 / 2e-52 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.011G157000 [exp] 185 / 8e-52 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 184 / 8e-52 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017448 pacid=23163133 polypeptide=Lus10017448 locus=Lus10017448.g ID=Lus10017448.BGIv1.0 annot-version=v1.0 ATGTTGGCAATGGAGAACGATTTTGATTCTAAGCTACGGATTCAGGGTGGCAATAATAGCTCTTCTGTTACAACATCAACTTCTTCTTCTTCAGCTGCTG GTAATAGTGGGAATCCCCCCAGATCTAAGAGTTTTTCTTTTAGGGCACCCCAGGAGAATTTCTCAATTCAGGATTTTGAGCTTGGGAAGATATATGGAGT TGGTTCTTACTCAAAGGTGGTGAGGGCCAAAAAGAAGGATACTGGAATTGTGTATGCGTTGAAGATCATGGACAAAAAGTTCATCACAAAAGAAAACAAA ACAGCTTATGTGAAGTTGGAAAGAATAGTGCTTGATCAATTGGATCATCCAGGAGTTGTTCGCCTGTATTTTACTTTTCAAGATACATTTTCCTTGTATA TGGCACTTGAATCCTGCGAAGGGGGAGAGCTTTTCGACCAAATAACTAGGAAGCACCGCTTATCGGAGGAAGAAGCTCAGTTTTATGCTGCTGAAATCGT AGATGCTCTTGAATACATACATAACATGGGGTTGATTCACCGAGATATCAAGCCGGAGAACTTGCTTCTCACAGCAGATGGACATATAAAAATTGCTGAT TTTGGAAGTGTGAAGCCAATGCAAGATAGCCGCATTACTGTGCTGCCAAATGCGGCTTCTGATGATAAAGCTTGCACATTTGTGGGCACAGCCGCATATG TGCCTCCGGAAGTACTCAACTCTTCTCCTGCAACTTTTGGAAATGACCTATGGGCACTTGGATGCACATTGTACCAGATGCTTTCAGGAACTTCTCCATT CAAAGATGCTAGTGAATGGCTTATATTTCAAAGAATTGTAGCCAGGGATGTACGTTTTCCCGAGTATTTCTCGAAAGAAGCTAGAGACCTCATAGATAGT CTGTTGGACATGGAACCCGGAAGAAGACCGGGAGCGGGGCCTGATGGTTATGCAGCTCTAAAGATACATCCTTTCTTTAAAGGGGTTGACTGGGATAATT TAAGATCCCAAACCCCTCCTGAACTTGCTGCTGACCCAACAGCTCAGTCTAGTGAAGGGAGCGAGCCTGATTCATGGAATCCTACTCATGTTGGTGACTA TTCTTCTGTACGAAATGATTTGAATGTTCCGGCTTCACCAACTCCGGAAGGATCTGGTCACGTAACACGCCTTGCCTCGATCGATTCATTCGACTCCAGA TGGCAACAGTTTCTGGATCCCGGGGAATCTGTAATGATGATCTCCATGGTGAAGAAATTACAGAAGTTGACGAGTAAGAAAGTGCAGCTCATTCTCACCA ACAAACCGAAGCTGATTTACGTAGACCCCTCCAAGCTTGTGGTCAAGGGCAACATAATATGGTCCGACAATTCGGACGACCTCAGCATTCAAGTGACTAG TCCTTCGAATTTCAAGATCTGTTCACCAAAGAAGGTGCTGTCATTTGAAGATACAAAGCAGAGAGCATGGCAATGGAAAAAGGCGATTGAGAGTCTTCAA AACCGGTGA
AA sequence Show only first row Show all	>Lus10017448 pacid=23163133 polypeptide=Lus10017448 locus=Lus10017448.g ID=Lus10017448.BGIv1.0 annot-version=v1.0 MLAMENDFDSKLRIQGGNNSSSVTTSTSSSSAAGNSGNPPRSKSFSFRAPQENFSIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENK TAYVKLERIVLDQLDHPGVVRLYFTFQDTFSLYMALESCEGGELFDQITRKHRLSEEEAQFYAAEIVDALEYIHNMGLIHRDIKPENLLLTADGHIKIAD FGSVKPMQDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIVARDVRFPEYFSKEARDLIDS LLDMEPGRRPGAGPDGYAALKIHPFFKGVDWDNLRSQTPPELAADPTAQSSEGSEPDSWNPTHVGDYSSVRNDLNVPASPTPEGSGHVTRLASIDSFDSR WQQFLDPGESVMMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLVVKGNIIWSDNSDDLSIQVTSPSNFKICSPKKVLSFEDTKQRAWQWKKAIESLQ NR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	0	1
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	2.0	0.7111
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10009122 [exp]	5.7	0.7190
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	9.4	0.6477
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	11.1	0.6771
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10003734 [exp]	16.2	0.6463
AT4G37080			Protein of unknown function, D...		Lus10021756 [exp]	19.8	0.6772
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	21.4	0.6390
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10035085 [exp]	23.1	0.5971
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	28.2	0.6322
AT3G03810		EDA30	embryo sac development arrest ...		Lus10013612 [exp]	30.2	0.6435

Compare expression of checked genes

Lus10017448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.