Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12230 169 / 1e-52 MED19A unknown protein AT5G19480 155 / 1e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028832 [exp] 240 / 1e-80 AT5G12230 201 / 3e-65 unknown protein Lus10002150 [exp] 223 / 5e-74 AT5G12230 202 / 1e-65 unknown protein Lus10008738 [exp] 221 / 6e-73 AT5G12230 191 / 3e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193800 [exp] 205 / 7e-67 AT5G12230 173 / 2e-54 unknown protein Potri.009G156200 [exp] 200 / 6e-65 AT5G12230 166 / 2e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017449 pacid=23163137 polypeptide=Lus10017449 locus=Lus10017449.g ID=Lus10017449.BGIv1.0 annot-version=v1.0 ATGGATCCTAATAGCAAGAAGTTCGGAAGTGGACCCAGAGAGCTAACCGGTGCTGTTGATCTTATAAGTCATTTCAAATTGTTGCCCCATCACGATTATT TTTGCAAGAAATCACTTCCTGTTTCAATTGCGGACACACATTACCTTCATAATGTGGCTGGAGATACTGAAATCAGAAAAGGGGATGGGATGCAGTTGGA TCAGCTTATCCAGAATAATTCCCGGCCAAGAGATGGAAGTATACGGATACAGCCTTTCGATCTTGATGTGCTAAGGGAGGCATTCCAGCTCAAGGAAACC ACTCCTGTAGACTTACCTGCTTCGGCAAAGGGCACTCCTACAATTGCTGGAAAATCGAAGAGCGAGTCAAAAGACAAAGACAGAAAACATAAAAAGCATA AGGACAGAGATAAGGACAAGGATAGAGAGCATAAGAAGCACAAGCACCGTCATAAAGACAAAGATAAAGATCGAAGTAAAGATAAGGAGAAGAAGAAGGA TAGAAGTGGCCATCATGAATCTAGTGATCACACCAGAAAGCACCATGAAAAGAAACGGAAACACGATGGAGATGAAGATCTAAACGATGTACACAGGCAC AAGAAAAGTAAGCACAAGAGTTCAAAGATGGATGAAATGGGCGCAATTAGGGTAGCAGGCTAA
AA sequence Show only first row Show all	>Lus10017449 pacid=23163137 polypeptide=Lus10017449 locus=Lus10017449.g ID=Lus10017449.BGIv1.0 annot-version=v1.0 MDPNSKKFGSGPRELTGAVDLISHFKLLPHHDYFCKKSLPVSIADTHYLHNVAGDTEIRKGDGMQLDQLIQNNSRPRDGSIRIQPFDLDVLREAFQLKET TPVDLPASAKGTPTIAGKSKSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDKDKDRSKDKEKKKDRSGHHESSDHTRKHHEKKRKHDGDEDLNDVHRH KKSKHKSSKMDEMGAIRVAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12230		MED19A	unknown protein		Lus10017449 [exp]	0	1
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	7.3	0.8317
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	10.4	0.8397
AT2G37670			Transducin/WD40 repeat-like su...		Lus10003974 [exp]	15.5	0.7927
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	17.7	0.8142
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10003745 [exp]	19.3	0.7883
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	22.8	0.8305
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	25.5	0.8133
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Lus10035699 [exp]	27.6	0.7640
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	28.0	0.8191
AT3G62140			unknown protein		Lus10038035 [exp]	29.5	0.8240

Compare expression of checked genes

Lus10017449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.