Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04520 335 / 2e-116 Protein of unknown function DUF455 (.1) AT1G06240 117 / 8e-31 Protein of unknown function DUF455 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028831 [exp] 383 / 2e-135 AT5G04520 475 / 6e-171 Protein of unknown function DUF455 (.1) Lus10017666 [exp] 122 / 3e-32 AT1G06240 489 / 1e-173 Protein of unknown function DUF455 (.1) Lus10033620 [exp] 75 / 1e-15 AT1G06240 303 / 2e-101 Protein of unknown function DUF455 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233000 [exp] 345 / 5e-120 AT5G04520 491 / 5e-177 Protein of unknown function DUF455 (.1) Potri.019G090600 [exp] 120 / 1e-31 AT1G06240 436 / 1e-152 Protein of unknown function DUF455 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF04305 [flax] [poplar] DUF455 Protein of unknown function (DUF455)
Representative CDS sequence Show only first row Show all	>Lus10017450 pacid=23163147 polypeptide=Lus10017450 locus=Lus10017450.g ID=Lus10017450.BGIv1.0 annot-version=v1.0 ATGTTTACTGATGCAGTTCTGATTGAATCCTGGTTTAATGCCGAAGCTTGGCAAAGCTGGTGGAAGCTTTGGCAAAGCCTGCAGAGTAGACGGACTATTG TCCATAGCCTTGCTCACACCGAAAGCTGGGCCATTGATCTCTCCTGGGATATAATTGCTCGGTTTGGGAAGCAAGAGTCAATGCCAATAGAATTCTTTAC AGGTTTCGTAAAGGTAGCTCAGGATGAGGGAAGGCACTTCACTCTCCTTGCTAAAAGTCTTGAGGAATTTGGCTCTTATGGAGCTTTACCTGCTCATGAT GGCCTTTGGGACTCTGCTATGGCGACATCCAAGAGTCTGTTAGCTCGTCTGGCTGTTGAGCATTGCGTTCATGAGGCCAGGGGACTGGACGTGCTGCCAA CAACCATCTCTCGATTCCGGAATGGAGGTGACAACGAAACTGCGGATCTATCGGAGGTCATTTACCCTGAAGATATTACGCATTGCGCAGCTGGAGTCAG GTGGTTCAAGTTCCTCTGCTCAAGGTCAACTTCTCCGTCTTTGGTCGAAGGGAGAGAAGAACCCGATAACACCGATGAGGAAGAAGAGGAGGAAGCAGTA ATCCAGAAATTCCATTCGGTTGTTATAACTCACTTCAGAGGACCTCTGAAGCCACCGTTTAACGCTGAAGCAAGAAAAGCTGCTGGATTCGGCCCTCAAT GGTATGCACCACTCGCCATTAAAGCATTCACTAAAGAACCTGAATAG
AA sequence Show only first row Show all	>Lus10017450 pacid=23163147 polypeptide=Lus10017450 locus=Lus10017450.g ID=Lus10017450.BGIv1.0 annot-version=v1.0 MFTDAVLIESWFNAEAWQSWWKLWQSLQSRRTIVHSLAHTESWAIDLSWDIIARFGKQESMPIEFFTGFVKVAQDEGRHFTLLAKSLEEFGSYGALPAHD GLWDSAMATSKSLLARLAVEHCVHEARGLDVLPTTISRFRNGGDNETADLSEVIYPEDITHCAAGVRWFKFLCSRSTSPSLVEGREEPDNTDEEEEEEAV IQKFHSVVITHFRGPLKPPFNAEARKAAGFGPQWYAPLAIKAFTKEPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	0	1
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	3.2	0.7962
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10035367 [exp]	12.6	0.7476
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	13.1	0.7617
AT4G35150			O-methyltransferase family pro...		Lus10025440 [exp]	14.6	0.7571
					Lus10006038 [exp]	15.8	0.6873
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	21.4	0.7397
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	24.1	0.6801
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	24.4	0.7394
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	26.9	0.7583
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	27.7	0.7352

Compare expression of checked genes

Lus10017450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.