Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52190 476 / 4e-168 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT2G01470 138 / 5e-37 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 138 / 6e-37 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 138 / 6e-37 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 48 / 7e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G02730 44 / 9e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G21651 43 / 0.0004 zinc ion binding (.1) AT3G49660 42 / 0.0005 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G37160 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G21650 42 / 0.0007 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028830 [exp] 693 / 0 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10037923 [exp] 630 / 0 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 614 / 0 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10035728 [exp] 156 / 2e-43 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 152 / 6e-42 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10038425 [exp] 57 / 2e-08 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 56 / 2e-08 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10028800 [exp] 44 / 0.0002 AT2G16405 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 44 / 0.0002 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029200 [exp] 562 / 0 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.010G232400 [exp] 560 / 0 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G130300 [exp] 166 / 2e-47 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 152 / 4e-42 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.011G156900 [exp] 54 / 1e-07 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.015G026100 [exp] 50 / 2e-06 AT3G49660 77 / 3e-15 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 44 / 8e-05 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 43 / 0.0003 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 41 / 0.0009 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017451 pacid=23163171 polypeptide=Lus10017451 locus=Lus10017451.g ID=Lus10017451.BGIv1.0 annot-version=v1.0 ATGGAGCCGGGGCAGGGGACCGTCGTGTTCGGGTCGTGGATCCGGAGACCGGAGAACGCTAATCTAGTCGTTTTGGGGAAGTCGAGAACTAAAGCATCTT CTTCTTCGTCATCAGCTTCATTGCTCGAGATCTTCTTCTTCGATCACACCACCACCTCTCTCTCTTCATCTCCCGTGGCTTCGTATGAGCTGGAAGAAGC AGATGGCGATTTAGTTTCGATCGCTGTTCACCCTAGCGGAGACGATTTCGTCTGCTCCACTACCAATGGTGGCTGCAAATTATTTGAGTTGCACGGTGAA GAAACAGAACTTAAGCTACAGGCTAAGGAATTGCCGGCTCTTCAAAGTGTTGGTCCCCAGAAATGCCTTGCTTTTAGTGTCGATGGCTCTAACCTTGCCT CTGGCGGTGTGGATGGACATCTCAGAATTTTGAAGTGGCCTAGTCTGAGTAGCATTCTAGATGAACCAAGAGCTCACAAATCCTTCCGGGATATGGATTT CAGCTTAGATTCGGAGTTCCTAGCTTCAACATCTATTGATGGTTCTGCAAGAATATGGAAGACAGAGGATGGTTCACCTGTGGTTTCTTTGGCTCGGAAT GCAGATGAGAGGATCGAGTTATGCCGATTCTCCAAAGATGGAACAAGGCCGTTCCTATTTTGTGCTGTTCAAAAAGGTGATGCGGTTATCACTTCAGTTT ATGATATAAGCACATGGAGAAAAATTGGATTCAAGAAGCTTCTTAAAAAGCCTGCTTCTATTATGTCTATGAGCTTGGATGGGAAGTATCTTGCGCTGGG AAGTAAAGACGGTGACGTATCTGTAGCGGAAGTGAAGAAGATGGAAATTAGCCACTACAGCAGGAGGCTGCACCTTGGTACATCCATTTCATCTCTCGAG TTCTGCCCTAATCAGAGGGTTGTGCTTACCACCTCGAATCAATGGGGTGCCGTGGTGACCAAGCTAACTGTTCCAGTAGATTGGAAAGAATGGCAAATCT ATGTGCTGCTTCTAGCACTGTTCTTAGCATCTGCCGTAGTGTTCTACGTTTTCTTCCAGAAATCAGATTCGTTTTGGAACTTCCCTATAGGGCGTGATCA ACCGGGCAGACCGAGGTTTCAGCCGATCTTAGAGGAGACACATTCCTCTGCTGAAGATCCATTTGGACCTCTAGACTTGTGA
AA sequence Show only first row Show all	>Lus10017451 pacid=23163171 polypeptide=Lus10017451 locus=Lus10017451.g ID=Lus10017451.BGIv1.0 annot-version=v1.0 MEPGQGTVVFGSWIRRPENANLVVLGKSRTKASSSSSSASLLEIFFFDHTTTSLSSSPVASYELEEADGDLVSIAVHPSGDDFVCSTTNGGCKLFELHGE ETELKLQAKELPALQSVGPQKCLAFSVDGSNLASGGVDGHLRILKWPSLSSILDEPRAHKSFRDMDFSLDSEFLASTSIDGSARIWKTEDGSPVVSLARN ADERIELCRFSKDGTRPFLFCAVQKGDAVITSVYDISTWRKIGFKKLLKKPASIMSMSLDGKYLALGSKDGDVSVAEVKKMEISHYSRRLHLGTSISSLE FCPNQRVVLTTSNQWGAVVTKLTVPVDWKEWQIYVLLLALFLASAVVFYVFFQKSDSFWNFPIGRDQPGRPRFQPILEETHSSAEDPFGPLDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10017451 [exp]	0	1
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	2.2	0.8133
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	3.6	0.8339
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	4.0	0.8304
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	5.7	0.8258
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	7.7	0.7791
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	11.5	0.8099
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	13.1	0.8291
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	14.1	0.7855
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	18.1	0.7367
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	23.9	0.7843

Compare expression of checked genes

Lus10017451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.