Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04480 1130 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G01210 613 / 0 glycosyl transferase family 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028829 [exp] 1902 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10002154 [exp] 696 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1) Lus10008732 [exp] 695 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029400 [exp] 1308 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.010G232000 [exp] 1308 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G166100 [exp] 681 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1) Potri.014G092500 [exp] 680 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10017452 pacid=23163097 polypeptide=Lus10017452 locus=Lus10017452.g ID=Lus10017452.BGIv1.0 annot-version=v1.0 ATGTTTCGATACTCTCTGCCGCCTGAAGTCGACGAAACTGCCGCCGGTCCCACTAGCCCTCCCTCCAACGCCGACGCCACCACCGCCACCACCGCCGATC AGAATTCTCACTCGATCCGCGACCGTCTCCGTTTCAAGCGCAACACTAACCACCTCGCATCCTCCTCCGCCACCACTTCCGGCCGCGGCTCCAAATCTAG AGAAGATCGCGCTTCTCGCAGATGGCATCACCACCATGGGACCGGCCGGCGGAAGAGCTGGCTCGCCTTCCGCGGAGTTTATCTCTTCTACTTCGTCATC GTTTTCACGGTTTTCGCTTTCGCCATAGGGGCGATGCTGTTGCAGAGCTCCATTACTTCGATGGTGTTCAGTAGAGGATGGACCGAGCAAAGGAGATCGG TTACGGAAGGGCTCAGATTGGGGACGACGTTGAAATTTGTACCTGGAATAAGATCGCGGCGGCTTGTCGAGGGGCCTGGACTCGATCAAATCAGAATGCA GCAGGGTGTTAGGGTGGGCCTCCGGTCCCCCAGGCTTGCTTTCATCCGTTGTGTGTTATACGCTGAGGAGAAATTCTTGAAAAAATACTACTTAACTGGA AATGTGAAGACAAATCCACAGTTGTTGATGTTGGTTACAATAATGAAGAATCTGAGGAAACTTGGCTATGCAATTCAGGTTTATGCACCCAAAAATGGTA GAACACAGGCAGTCTTGGAGCAAACTGGTGGCCAGATATCAATATTACCTGCTGAGAACTACAATACTATCGACTGGTCAATGTTTGATGGTATTATCTT GGATTCGCTCCAAGCAGAAAAAGTTATGCCAAGCCTTATGCAGGAGCCTTTCTGTTCAATACCAGTTATCTGGATAATACAGGAAGATGTGCTTGCTAAT CGTCTTCCACTGTATGAGGAAATGGGCTGGACAAAGCTCGTGACTTACTGGAGGAGTGCGTTAAGCAGAGCTAGTCTTGTGGTTTTTCCAGATTTCACTC TTCCGATGCTATACAGTGCGATTGACCCTGGGAACTTCTTTGTGGTTCCTGGATCACCGGTAGATGTTTGGGCTGCTGAAATTTACAGGAAGACCCATGA CAAACATCAGCTGAGGGTGGACAATGGATTTGAGAGAGCAGATATTGTAGTTTTAGTTGTTGGGAGTTCCTTCTTCTACAATGAATTGTCTTGGGACTAT GCCGTCGCAATGCATTCCCTAGGTCCCTTACTTAGCAAGTATGCCAGAAGAAATGATGCCGAAGGATCATTTAAATTTGTTTTCTTGTGCGGTAATTCAA CTGATGGTGGCGCCATACAGGAAGTCGCTTCTCGTTTGGGACTTATTCATGGTTCCGTTAGGCATTATGGTCTGCATGGTGATGTCAATAGTGTATTGTT AATGGCAGACATAGTTGTTTATGGTTCTTCTCAGGACGAACAGGGTTTTCCTCCTTTGATTGTCCGGGCCATGACCTTTGGAATTCCGGTCCTGACACCT GAAACCTCCATGATGAAAAAATATGTCACTGATGAAGTCCATGTGCTGTTTTTGCCAAAGTATGATCCTGAAGCTTTGATGAGGACTTTCTCTCTTTTGA TATCAGAAGGAACTATCTCCAAACTTGCCAGAACCCTTTCTGTCTCTGGACGACTATTTGCTAAAAATATGCTTGCAACTGAATGTGTATCTGGTTATGG AAAGCTCTTAGAGAACATTCTTAGCTACCCCTCGGATACTTTGCTCCCAGCTTCTGTGAGTCGGCTTCAAGAGATCACATGGGAATGGGCTTTGTTTGGT GACAAGATAGAAGAGGAAGCTGCTGACTATAATATCAGAGGTTCGGATGTCGTTCAGTATCTTGAAACAGAGGCTTGGGACCTTGTCACATCTACAAATA TCTCTGGTAATACAACCAATATGTGGGCGCCAGATAGTGTCATGAAGTCGGATTGGGGTGTTTTGCACGAAATAGAAAATTATGTAGAATTCGAGACTGT AGAGTTGCAACAGGTTGAGGAGCGGATGGACAAACACCCAGGTGTGTGGGATGAGATATACCGCAATGCACGAAAAGCTGAAAAACTAAAGTTTGAAGCA AACGAAAGGGACGAGGGAGAGCTAGAACGGACAGGGCAACCAGTATGTATCTATGAGATATATCCGGGAGCTGGGGCCTGGCCCTTCTTGCACCATGGTT CCTTATACCGTGGTCTAAGTCTTTCCACAAGGGCCCTTAGACCAAGATCAGACGACGTGGATGCGGTTTCCCGGCTTCCTCTCTTGAATGACTCATATTA TCGAAACGTACTGTGCGAGATGGGTGGAATGTTTTCAATTGCAAATAAGGTGGATAACATCCACAAAAGACCTTGGATTGGGTTTCAGTCTTGGCGTACC ACAGATAGGAAGCCTTGTTTCTGTGGAGAGCAGGTTTCATTATTTCCCAACGCGGAAAGAGTTTTGGAAGAGAAAATACAGAAAGAGACTGTGGGAGATG TAATATACTTTTGGGCCAAATTAGACATGGATTACGAAGCCACGGGAAGCAGTGGCGAACTATCTTTCTGGCCCTTGTGTGACGTGTTAAATGCAGGACG ATGCAGAACAACTTTTGAAGATGCATTTCGTCAGATGTTTTCCCTGCCATCGCATCTAGAAGGTCTTCCTCCTATGCCGGAGGATCGAGGTCATTGGTCT GCTTTGCATAGCTGGGTGATGCCAACCCCTTCATTTTTGGAGTTCATCATGTTTTCCAGAATGTTTGTTGATTCCCTCGACTCATTGCAAGCCAGTTCCG GTGTAGCATGTCTGTTGAGTTCCTCAGAAGTTGAGGAAAAGCACTGCTACTGTCGAATCATGGAGATACTTGTGAATGTATGGGCTTACCAAAGTGGTAG AAGGATGGTTTACATAGATCCGGTATCCGGCAATCTCGAAGAGCAGCACTTACTCGAACAACGAAAGGGGACTATATGGGCAAAATATTTTAACCTGACA TTGCTGAAGAGCATGGATGAAGATCTTGCAGAGGCTGCTGATGATGGTGACCTGGCTCGGGAAAGATGGCTATGGCCATTAACAGGGGAAGTTCATTGGC AAGGTATCTACGAGAGGGAAAGATTGGAACGGTATAGACAGAAAATGGACAAGAAGAGGAAACATAAAGAGAAACTGGCGGAGAGAAGTAGGATAGGATA CAAGCAGAAACCACTCCGAAGATAA
AA sequence Show only first row Show all	>Lus10017452 pacid=23163097 polypeptide=Lus10017452 locus=Lus10017452.g ID=Lus10017452.BGIv1.0 annot-version=v1.0 MFRYSLPPEVDETAAGPTSPPSNADATTATTADQNSHSIRDRLRFKRNTNHLASSSATTSGRGSKSREDRASRRWHHHHGTGRRKSWLAFRGVYLFYFVI VFTVFAFAIGAMLLQSSITSMVFSRGWTEQRRSVTEGLRLGTTLKFVPGIRSRRLVEGPGLDQIRMQQGVRVGLRSPRLAFIRCVLYAEEKFLKKYYLTG NVKTNPQLLMLVTIMKNLRKLGYAIQVYAPKNGRTQAVLEQTGGQISILPAENYNTIDWSMFDGIILDSLQAEKVMPSLMQEPFCSIPVIWIIQEDVLAN RLPLYEEMGWTKLVTYWRSALSRASLVVFPDFTLPMLYSAIDPGNFFVVPGSPVDVWAAEIYRKTHDKHQLRVDNGFERADIVVLVVGSSFFYNELSWDY AVAMHSLGPLLSKYARRNDAEGSFKFVFLCGNSTDGGAIQEVASRLGLIHGSVRHYGLHGDVNSVLLMADIVVYGSSQDEQGFPPLIVRAMTFGIPVLTP ETSMMKKYVTDEVHVLFLPKYDPEALMRTFSLLISEGTISKLARTLSVSGRLFAKNMLATECVSGYGKLLENILSYPSDTLLPASVSRLQEITWEWALFG DKIEEEAADYNIRGSDVVQYLETEAWDLVTSTNISGNTTNMWAPDSVMKSDWGVLHEIENYVEFETVELQQVEERMDKHPGVWDEIYRNARKAEKLKFEA NERDEGELERTGQPVCIYEIYPGAGAWPFLHHGSLYRGLSLSTRALRPRSDDVDAVSRLPLLNDSYYRNVLCEMGGMFSIANKVDNIHKRPWIGFQSWRT TDRKPCFCGEQVSLFPNAERVLEEKIQKETVGDVIYFWAKLDMDYEATGSSGELSFWPLCDVLNAGRCRTTFEDAFRQMFSLPSHLEGLPPMPEDRGHWS ALHSWVMPTPSFLEFIMFSRMFVDSLDSLQASSGVACLLSSSEVEEKHCYCRIMEILVNVWAYQSGRRMVYIDPVSGNLEEQHLLEQRKGTIWAKYFNLT LLKSMDEDLAEAADDGDLARERWLWPLTGEVHWQGIYERERLERYRQKMDKKRKHKEKLAERSRIGYKQKPLRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	0	1
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	2.6	0.8047
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	2.8	0.8128
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	5.7	0.8442
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	8.2	0.7241
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	8.5	0.8197
					Lus10011723 [exp]	10.0	0.8228
					Lus10022884 [exp]	12.5	0.7957
					Lus10024552 [exp]	16.9	0.8114
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	17.8	0.6904
					Lus10024939 [exp]	21.4	0.7950

Compare expression of checked genes

Lus10017452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.