Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52170 134 / 1e-33 DNA binding (.1.2) AT5G58210 61 / 8e-10 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028828 [exp] 806 / 0 AT3G52170 131 / 8e-32 DNA binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G231900 [exp] 219 / 7e-65 AT3G52170 138 / 2e-35 DNA binding (.1.2) Potri.008G029500 [exp] 214 / 1e-63 AT3G52170 128 / 3e-32 DNA binding (.1.2) Potri.018G151900 [exp] 70 / 7e-13 AT5G58210 89 / 4e-20 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017453 pacid=23163126 polypeptide=Lus10017453 locus=Lus10017453.g ID=Lus10017453.BGIv1.0 annot-version=v1.0 ATGCTTGCTATAAAGGGCAGCTGGGTTGGCCGAACATATGCTCTATCCAAGTCCAACGAGTCCGGCGGGAGGAAGGCTCGCATCCGGCGTTCCAAGGAGG AAAGGAAGGGCATGGTTGAATTATTTATAAAGAAGTATCAGAGCTTGCACAATGGGAACTTTCCTTCTCTTACTCTGACTCAGAAGGAAGTTGGTGGGAC ATTCTACACTGTCCGCGAGATTGTACGAGAAATAATCCAAGAAAATCGGGTGTTGGGTCCTGGTAAGTTATTGCCCGAGGACCAAGACTCTCATGAGTGG TCGGAGCAGTATCCCCTAGGCACAATATCCACAGAACCTCAGTCTTCTTCAGCTTTGATACCAAATGGAAATGTACTATCACCTGATCAACATCAGAGTT CGCTACAAGAATTTTCATCCACTTATCATGAGCATGTTTCCGAATCTCAGAAGCACCAAGCTGAAGTTGGGCAAGATATTAATGGGAGCTTTTTAATTGT TGGAGATGTTGAATCTCATCAAGAAAAGGTTCATGAGTTTCAACAAAAGGATAATGGAGTGGCTCCAACAGAAGATATAACAGTAGCTGATGATCCTTCG ATAGATGATGAGTTTGTGAAGCCAGTCTTCTCTGCAGTTCAGGTAGGTGAATCGCTAGGAAACCAGCCGTGTTTGGATGAAGTAGGGAATTCAGTCGCAG AGATAAATTCGCTGGAAGTTAAAGAATCTTATGAACAAATGGAAGCAAAAGTAGAAGATCAAGCAATAGCGATACAACGACACCAGCCATGTTCGGATGA GTTAGGGAATTCAGTCGAAGAGATAAATTCTCTGGAAGTTGGAGAATCTTATGAACAAATGGAAGCAAAAGTAGAAGAACAAACAACAAGGAAGGTTAAT GTGGGAAATGCAGTCATTGACAGTCAAGTGGTAGCAGAAGGTCAAGATCGAACAGAAAAAACTGATAACGAAGTGGCTGGTTCAGTTGTACATAGCCCTT CCTCAGAAGTTGAAGCATCTAGAGACCAACTCCAAGCAGAAAATGTGGTAAAGCAACCGGAGGACAGTGTTTGTGCAGATAATAGTGTCAAAGTTGTGGG ATCGTCTAGGCCAAAAGTATTTCAAACAGAAGATGTTGTGGTGGAAACTTTTCCGTTACGACCCATTGTTTCAAGAACTGATGGTAATGAAGCAGTAAGT GGTTCAAATGGAACATGGGAAAGAATGGATGCTGAGAAGGTTGAACCAGGGCCAAGTAAAGATGGTTCAAGTTCATCTGTTGTAGATGATCTAGATAACG GCCAAATATCTTTGTTGGGAAAACAGTCAGTCACGTCTGATGAGCAAGCGAGTGCAATTGGGGTTGCTGCAACAAAGGATGACTCTGATAGTGTTGAAGT GAAGTCAAAGTTATCTAATGACCAGGTGCCAAGTGTGAAGAACATTGCGAAAAACTCCCCGGACCGAATTGCAGACAACAAAGGCGGGCAGAAGAGAAGA GATCCAACATTGGAAAGAATAAACATGTCATGGCAAGGATCGTCCAATATGCATTCACCAGCAGAAACCAACCCGCTTATCGAGGCTTTACGAGCAGTCA TAACCTCATTTGTTAAATTCTGGACGAAAAAAGATTGA
AA sequence Show only first row Show all	>Lus10017453 pacid=23163126 polypeptide=Lus10017453 locus=Lus10017453.g ID=Lus10017453.BGIv1.0 annot-version=v1.0 MLAIKGSWVGRTYALSKSNESGGRKARIRRSKEERKGMVELFIKKYQSLHNGNFPSLTLTQKEVGGTFYTVREIVREIIQENRVLGPGKLLPEDQDSHEW SEQYPLGTISTEPQSSSALIPNGNVLSPDQHQSSLQEFSSTYHEHVSESQKHQAEVGQDINGSFLIVGDVESHQEKVHEFQQKDNGVAPTEDITVADDPS IDDEFVKPVFSAVQVGESLGNQPCLDEVGNSVAEINSLEVKESYEQMEAKVEDQAIAIQRHQPCSDELGNSVEEINSLEVGESYEQMEAKVEEQTTRKVN VGNAVIDSQVVAEGQDRTEKTDNEVAGSVVHSPSSEVEASRDQLQAENVVKQPEDSVCADNSVKVVGSSRPKVFQTEDVVVETFPLRPIVSRTDGNEAVS GSNGTWERMDAEKVEPGPSKDGSSSSVVDDLDNGQISLLGKQSVTSDEQASAIGVAATKDDSDSVEVKSKLSNDQVPSVKNIAKNSPDRIADNKGGQKRR DPTLERINMSWQGSSNMHSPAETNPLIEALRAVITSFVKFWTKKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	1.7	0.8786
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	3.9	0.8687
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	4.1	0.8814
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	5.3	0.8445
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	6.0	0.8793
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	7.9	0.8631
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10007211 [exp]	8.0	0.8224
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	11.0	0.8554
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	13.9	0.8707
AT5G43960			Nuclear transport factor 2 (NT...		Lus10014469 [exp]	14.4	0.8591

Compare expression of checked genes

Lus10017453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.