Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04460 709 / 0 RING/U-box superfamily protein (.1.2.3) AT2G27950 234 / 1e-65 Ring/U-Box superfamily protein (.1) AT1G30860 97 / 1e-20 RING/U-box superfamily protein (.1) AT2G34920 96 / 2e-20 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT4G20160 64 / 3e-10 unknown protein AT2G38195 56 / 4e-08 RING/U-box superfamily protein (.1.2) AT2G38220 56 / 8e-08 RING/U-box superfamily protein (.1) AT4G14365 54 / 2e-07 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT3G23280 54 / 3e-07 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT2G38185 51 / 2e-06 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028827 [exp] 1321 / 0 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 1021 / 0 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 999 / 0 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 232 / 3e-65 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 176 / 2e-47 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10036249 [exp] 64 / 4e-10 AT4G20160 182 / 3e-48 unknown protein Lus10038389 [exp] 63 / 7e-10 AT4G20160 155 / 2e-40 unknown protein Lus10003551 [exp] 54 / 1e-07 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10004419 [exp] 54 / 2e-07 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030100 [exp] 933 / 0 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 928 / 0 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.004G217700 [exp] 278 / 3e-81 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 274 / 6e-80 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.003G156400 [exp] 125 / 2e-29 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 120 / 9e-28 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.008G167600 [exp] 55 / 2e-07 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 54 / 4e-07 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 53 / 7e-07 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G202700 [exp] 52 / 8e-07 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017455 pacid=23163138 polypeptide=Lus10017455 locus=Lus10017455.g ID=Lus10017455.BGIv1.0 annot-version=v1.0 ATGACTGACTTGCAAGCGGTACAACAAAAGCCAGAGTCCACCACAAATGATGCTGGTGTGGATTTTGAAGGGGGCTGGGAGGAATTGATTCGAGGACCCT TAGATGAATGTACATCATTTCCGTCATGTAGCTCCACTCGTACCCCGGACAACGAGGATCATGAAGAGGGAGATCATCTCGTTCGAAGGAGACGAAGGTC TGATCTCGAAGGCGATGATTTGGCCGAGTCCTCAGCTGCTAGGAGGCGCCACTCCCGCATTCTCAGCAGGTGGGCTGCTCGGCAGGCACAAGAGATGATC ACCACTATCGAGAGGAGGAATCGCGAGTCGGAGTTAATGGCGCTTGCTCGTCTCCACACGGTCTCCATGCTTGACTCCTCGTTTTTAAGGGAGTCGCAAT CGCCCCCTCCTACTTCCAGAAGGCAGGGTGCAGCAGCTGAACTTCCAAGCACTCGTGCATCGGCAATTCTGCAGATGTGGCGGGAGCTGGAGGATGAGCA TGTGTTGAACAGGGCTCGGGAGAGGGTGAGGGTTAGGGAAAGGTTGAGGCAACAAAGAAGTGTGGAATCTACTACCGTGAATGCTTCTTCCACTGCAAAC ATGTCCGAGGCTGGAGGAAGTGAGGGATCACCGACTCAGGCTGGAGATAATAATGACTCTGTTAGGGAGCAGTCTCCTGATCTTGGAGAAGTTGAGAGGG AGAGGGTGAGGCAGATTGTTCAAGGATGGATGGGGAGCGGTGTGAGTGATCATGCATCGAATGTGTCTCAACGAAATGGAAATACTAGAGGAGAATGGCT TGGTGAAACGGAACGTGAGAGAGTGAGACTTGTGAGGGAGTGGGTGCAAATGACAAGTCAACAACGCGGGGCACGTGGGGGACGGAGGGCTGATCACGAT GAAGTGCAACCAGAACATACTCGCAGGGACGTGCTTAGGTTACGTGGTAGACAGGCAGTTATTGATTTGCTTATGAGGATTGAAAGGGATAGGCAGGGGG AGCTTCAGGGATTGTCGGAACATAGAGCTGTTTCTGAATTTGCTCACCGCAATCGCATTCAGTCGCTATTGAGGGGTAGATTCCTCAGAAATGAAAGAAT TGCCGAAGACGAGAGACCACCTTCAGTGGCTGCAAATGAATTACTCCATTTAAGACAACGTCACACTGTTTCTGGTATAAGGGAAGGGTTTCATTCAAGA TCGGAAAATATCGTTCATGGTCAAGGTGTTCAACATGAAGATAATGTTCAATCTGAAACTAGGGCTCAAGAAAATGAGCCCCGCTCGTTACCTGATCAGA CTGACACCTCAGAAAGAAATGCTGCCGTTGATAACATCAATTGGCAGGGAAATGTTAATCAAGCTAGGGGTTGGCAGGGAGAGATTACGGATAATGTGGG AGGGAACTGGCAACAGTCGGATTATGGTCCTTTCAATGAGTGGAGAGATGACAGCGCTGAGCCTATGGATCGAAATTGGCAGCATAATAGTGTTGACAAT TGGCCTCCAGAAACACCTGGTAATGTACATAATGAACCAGGCCATCTACAGGAAGCCCGGGGAGCCTGGCGTGAAGATGGCTCTCAGGAGGCGGTAGAAA CGTGGATAGAGGGGCCTTCTGATCCACCAAGAGCTCGCCGTACTGTTCCATCGAGAAGGTTTAGTAGATTTCACCCTTCCGATGATGAAAATGTGTACAG CATGGAGCTTAGGGAATTATTGAGCAGGCGAAGTGTATCTAATCTGCTTCGGAGCGGGTTCCGTGAAAGTCTGGACCAATTGATACAATCATATGCGGAA AGACAAGGTCGTGGTCCCAGTGATTGGGATGTCCACAGAAACTTGCCTACTTTACCAGAGCAGGATGAAGAGCAGCAGACAGATGAACATCGCGAGGCTG TAAACAGACCTTCACTGGTTCTTCCATCTCCACCAGTGCCACCACCTCAGCCTCTTTGGCACCAGGATTTACATCAGACAGGCTTGTCTCGTCATAGCAT GCATCGATCTGAACTCGAGTGGGAAACGATGAACGACTTGAAAGCAGATATGGCTAGGCTTCAGCAAGGAATGAGCCACATGCAGAAAATGGTGGAAGCT TGCATGGATATGCAACTAGAGCTCCAGCGCTCTGTTAGACAGGAGGTTTCTGCAGCTCTGAATCGATCTGCTAGCGAAAAAGGAACGAGTGCAGAGACAT CAGAGTATGGCCCTAAATGGGGCAATGTGAAGAAAGGGACTTGCTGTGTATGTTGTGATAGTCACATAGATTCTTTATTGTACAGATGCGGGCACATGTG CACGTGTATGAAGTGTGCAAACGAACTGGTGCGTAGCGATGGTAAGTGTCCGCTGTGTCGAGCACCGATCGTGGAAGTGATACGAGCATACTCAATACAG TAA
AA sequence Show only first row Show all	>Lus10017455 pacid=23163138 polypeptide=Lus10017455 locus=Lus10017455.g ID=Lus10017455.BGIv1.0 annot-version=v1.0 MTDLQAVQQKPESTTNDAGVDFEGGWEELIRGPLDECTSFPSCSSTRTPDNEDHEEGDHLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMI TTIERRNRESELMALARLHTVSMLDSSFLRESQSPPPTSRRQGAAAELPSTRASAILQMWRELEDEHVLNRARERVRVRERLRQQRSVESTTVNASSTAN MSEAGGSEGSPTQAGDNNDSVREQSPDLGEVERERVRQIVQGWMGSGVSDHASNVSQRNGNTRGEWLGETERERVRLVREWVQMTSQQRGARGGRRADHD EVQPEHTRRDVLRLRGRQAVIDLLMRIERDRQGELQGLSEHRAVSEFAHRNRIQSLLRGRFLRNERIAEDERPPSVAANELLHLRQRHTVSGIREGFHSR SENIVHGQGVQHEDNVQSETRAQENEPRSLPDQTDTSERNAAVDNINWQGNVNQARGWQGEITDNVGGNWQQSDYGPFNEWRDDSAEPMDRNWQHNSVDN WPPETPGNVHNEPGHLQEARGAWREDGSQEAVETWIEGPSDPPRARRTVPSRRFSRFHPSDDENVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYAE RQGRGPSDWDVHRNLPTLPEQDEEQQTDEHREAVNRPSLVLPSPPVPPPQPLWHQDLHQTGLSRHSMHRSELEWETMNDLKADMARLQQGMSHMQKMVEA CMDMQLELQRSVRQEVSAALNRSASEKGTSAETSEYGPKWGNVKKGTCCVCCDSHIDSLLYRCGHMCTCMKCANELVRSDGKCPLCRAPIVEVIRAYSIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	0	1
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	2.0	0.8499
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	2.8	0.8714
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	3.2	0.8108
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	6.0	0.8256
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	6.0	0.8046
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	7.7	0.8492
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	11.0	0.8096
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	12.1	0.8073
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	13.7	0.8018
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	14.0	0.7973

Compare expression of checked genes

Lus10017455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.