Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04420 599 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G05420 427 / 5e-143 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 418 / 5e-140 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 193 / 6e-54 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 117 / 1e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 105 / 6e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G68050 91 / 5e-19 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 89 / 2e-18 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G36360 87 / 6e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT2G18915 84 / 8e-17 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028825 [exp] 949 / 0 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037933 [exp] 771 / 0 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 769 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 440 / 4e-148 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 426 / 9e-143 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 420 / 6e-140 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 415 / 2e-138 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 183 / 2e-50 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 169 / 3e-45 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031200 [exp] 697 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 676 / 0 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.013G018800 [exp] 420 / 3e-140 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 419 / 8e-140 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G214900 [exp] 209 / 2e-59 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 202 / 5e-57 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G030901 [exp] 160 / 6e-47 AT5G04420 120 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 143 / 2e-36 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 137 / 1e-34 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 104 / 1e-23 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10017457 pacid=23163108 polypeptide=Lus10017457 locus=Lus10017457.g ID=Lus10017457.BGIv1.0 annot-version=v1.0 ATGGGATTTGGGGAGATTAGAGGCGCAGATGTTGGTGATTGGTTTTCACAATTGCCATATGAAGAATGGGGGGCAATTCCTGTTTTTGGCCCCCGACCAT CAGCTCGCTACAAGCATGCCGCTGCCTTTGCTGATGATAGGTTATATGTCCACGGTGGAAGTTGTAATGGTCGTCACCTATCTGATATGCAGGCTTTTGA TTTTGGAAGTTTGGCATGGTATAGCCTTATACCGAAATATGAGTTGAATGGACCATCTAAAATTGAGGAAAGTGGATCTCAAGAAATTCTTCCAGCCACG TCAGACCACAGCATGGTGAAGTGGGGAAACAAACTCCTGCTACTCAGTGGACATTCCAAAAACTCTTCTGATAGCATGATAGCTCACTTCATTGATCTAG AAACACAACACTGTAGTATGCCAGAAACCTCTGGAAAATCTCCGTCAACACGAGGGGGCTATTCTGCCACTCTTGTTGGTTCCAGGCTGGTGATTTTTGG TGGAGAGGATCGGAATAGGAAGCTGCTGAATGACGTCCATACCCTCGATCTTGAAACACTGACGTGGGAGTTGGTGCAAACAATGCAGACACCTCCATCT CCGCGATTTGACCACACAGCTACAGTACATGCAGGGCGATACCTTCTTGTATTTGGCGGTTGTTCTCACTCAATCTTCTTCAATGATCTTCACGTGCTTG ACCTACAGACAATGGAGTGGACCCAACCAGAGATTCGAGGGGATTTGGTGAATCCTAGGGCTGGTCATGCTAGTATAACCATCGACGAGAACTGGTATAT CGTTGGTGGTGGAGATAATAAAAATGGTTCTCTAGAGACGCTTGCATTAAATATGTCCAAGCTGGCCTGGTCTACATTGATTAGTGTAAAGGAAAGACAT CCACTTGCCAGTGAGGGACTAAGTGTTTCCTCAGCATTGATCAAAGGAGAGAAGTACTTGGTTGCTTTTGGTGGCTATAATGGGAAGTATACTAACGAGA TCTTTGTTATGCGACTGAAACCGAGAAACACACTGCAACCCAAGATTTACAAGTCACCAGCAGCAGCTGCTGCTGCTGCTTCTGTTTCAGCTGCATATGC CTTGTCTAAACCTGAGAAGTTAGATATATTTAACAAAGAAGTTAGTTACGGAGAAGAGAAAGGTAAAAGACCTTCTCAGGAAGATGTCGCCGTAGAAATT GATGCAATCAAGGAAGACAAAAAGATGCTGGAAGTGTCACTAGCAGATGTCAGCACAGATAAATCTAGAGTCAGAGAAAAGATCGATGAAGTTAACTCTA CTCATGCTGATCTATCCAAGGAACTCCATTCTGTCCAGAGTCAATTGGTGACTGAAAGATCTAGATGCTTCAAACTTGAGGCACAGATAGCTGAGCTGCA GAAGGCACTGGAATCACTGGAGACGATAGAGAACGAAGTCCAACTACTTCGGAGGCAGAAGTCTGCCTTGGAAAAAGAGACGGAGATGAACAATGCTGCC AGTGAAAGCGAAAGGCAGAACTCCCGCGGAGCTTGGCGTTGGATAGCTGGGTGA
AA sequence Show only first row Show all	>Lus10017457 pacid=23163108 polypeptide=Lus10017457 locus=Lus10017457.g ID=Lus10017457.BGIv1.0 annot-version=v1.0 MGFGEIRGADVGDWFSQLPYEEWGAIPVFGPRPSARYKHAAAFADDRLYVHGGSCNGRHLSDMQAFDFGSLAWYSLIPKYELNGPSKIEESGSQEILPAT SDHSMVKWGNKLLLLSGHSKNSSDSMIAHFIDLETQHCSMPETSGKSPSTRGGYSATLVGSRLVIFGGEDRNRKLLNDVHTLDLETLTWELVQTMQTPPS PRFDHTATVHAGRYLLVFGGCSHSIFFNDLHVLDLQTMEWTQPEIRGDLVNPRAGHASITIDENWYIVGGGDNKNGSLETLALNMSKLAWSTLISVKERH PLASEGLSVSSALIKGEKYLVAFGGYNGKYTNEIFVMRLKPRNTLQPKIYKSPAAAAAAASVSAAYALSKPEKLDIFNKEVSYGEEKGKRPSQEDVAVEI DAIKEDKKMLEVSLADVSTDKSRVREKIDEVNSTHADLSKELHSVQSQLVTERSRCFKLEAQIAELQKALESLETIENEVQLLRRQKSALEKETEMNNAA SESERQNSRGAWRWIAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	0	1
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	2.0	0.8679
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10022557 [exp]	3.0	0.8432
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	4.0	0.8684
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	6.5	0.8491
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	8.4	0.8425
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	10.3	0.7707
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	10.6	0.8259
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	13.4	0.8224
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	14.7	0.8357
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	17.3	0.8575

Compare expression of checked genes

Lus10017457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.