Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04410 371 / 1e-122 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10500 355 / 2e-116 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10490 225 / 2e-70 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G10480 228 / 5e-69 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT5G09330 213 / 1e-62 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT1G34190 211 / 4e-61 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 207 / 6e-60 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT5G64060 194 / 3e-57 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G17730 180 / 4e-53 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G32870 187 / 6e-53 NAC ANAC13, ANAC013 Arabidopsis NAC domain containing protein 13, NAC domain protein 13 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028824 [exp] 893 / 0 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 243 / 8e-75 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 233 / 5e-71 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 244 / 6e-70 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028713 [exp] 203 / 2e-58 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10020896 [exp] 196 / 4e-57 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10007377 [exp] 189 / 3e-52 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 189 / 1e-51 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10026373 [exp] 178 / 2e-51 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031800 [exp] 497 / 7e-172 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 496 / 2e-171 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229700 [exp] 242 / 4e-74 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.002G061300 [exp] 209 / 2e-60 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.007G109100 [exp] 199 / 3e-58 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.005G058900 [exp] 194 / 1e-56 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.005G200100 [exp] 196 / 9e-56 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.010G174600 [exp] 187 / 2e-54 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.008G081500 [exp] 185 / 1e-53 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 191 / 3e-53 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10017458 pacid=23163163 polypeptide=Lus10017458 locus=Lus10017458.g ID=Lus10017458.BGIv1.0 annot-version=v1.0 ATGGCCCGTGGAGACTCGGAAGCTTTTCTCGGACCTGGTTTCCGATTCCATCCCACTGACGAGGAGCTGCTCCGCTATTACCTCAAGCGGAAGGTCACTA ACAAGCCCCTTCGCTTTGACCCCATTTCCGTCGTCGATGTTTACAGATCGGAGCCATGGGATCTTCCTGTGCGTGCCAAGTTGAAGAGCAGGGACTTGGA GTGGTACTTTTTCAGCCTGTTGGATAGGAAGTATGGAAATGGATCCAAGACCAATCGAGCTACAGAGAAAGGATACTGGAAAACAACTGGGAAAGACAGG CCTATTCGCTCCAACTCGGCCACTGTTGGGATGAAGAAAACTCTTGTCTACCATCTCGGGCGAGCTCCGCGGGGTGAGCGTTCCAATTGGGTAATGCATG AGTACCGTCTCTCTGAGGAGGAATTGGAGAAGTTTGGAGTTGGCCAAAGCGGAACTGGACCGAAGAATGGAGAACAGTATGGAGCTCCGTTCGTCGAGGA GGAATGGGAAGATGAGGATGTCCCTCTCCTACCTGGTGAAAATGCCGTTGTTACTGATGGTTTGGATGAATTTTACGGTGAATATCTCGATGCAGTAGAC TTTGATCAGAAACTTGAAGTGGGGGATGAGAGTGCGGCTGCTGCTGTTCCAATCACCACTTACTATGAAGAGACTAGCAACTATGTAGAAAATGGTGGGA GCTCCAGTGAAGATGGTTCAAACCCTCTGATTGATGGCGCACTAGTTACTGCTGCAGTGCCTGTTGATCAACAGTTACCTTACGCTCAACATGAGGAAGT GGATAACAACTGTGAAGATGTAAATTATGTTGGAAGTTCAACCAAGGACTTGAGTATTCCCAAATACGAGGAAATGGTTGATAGTTCTTTTGTGGATGCT GGTGGAAGTTCTCAATTTGCTGATGGGCTTTCCTTCGAAGCATTCGAACTTCAAGACAATATGGAGCCAGGGTCTTGCTCAGAAGACCCTACAGATTTTA ACTTGGAGGAATACTTGGATTTCGATGACCTGTCCTTTGATCCTTTCGGTCCATTGGAGAATGATGCTTCCAGTTATGATCTGTCACCTGAATCCAACAA GGATTTGAATGGAGGAGTTGTTAATGCTGACATAAACAGTGAGAATCTTCCGAGCATGAATGGTCATGCATCGTCCTCTGAGCAGAACACTGATGCTATG ATGCCAAAGTTCAACCCAATGAAATCAGATTTCGGTACGAGCTATCCGTTCATTGGGAAAGCAAGCAAGATGCTGGGTGACATACCAGCACCACCTGCCT ATGCTGCAGAGTTCCCAGTCAAGGGAGCTGCTCTTCATTTCACTTCAGCACAGGAAGCTTCAAGCTCGATTCGCGTCACTGCTGGTATGATAAGAATAGA GGAGATGGGCGTAAGAGGAAATGAGATGATGTTTGGTAAAAACATGGGAGTCAACGTCGTGATGTCGATTACGTGGCCACAAGGTGAGAGTTCGAAGACG GGTTCGATGTCGAGGGTGTCGCTGTTTCTGATGTTGTTCTGGATTCTAGTACTCTCTGTGAGCTACAAGGTTGGGACGTGCATTTGCGCAAAGTGA
AA sequence Show only first row Show all	>Lus10017458 pacid=23163163 polypeptide=Lus10017458 locus=Lus10017458.g ID=Lus10017458.BGIv1.0 annot-version=v1.0 MARGDSEAFLGPGFRFHPTDEELLRYYLKRKVTNKPLRFDPISVVDVYRSEPWDLPVRAKLKSRDLEWYFFSLLDRKYGNGSKTNRATEKGYWKTTGKDR PIRSNSATVGMKKTLVYHLGRAPRGERSNWVMHEYRLSEEELEKFGVGQSGTGPKNGEQYGAPFVEEEWEDEDVPLLPGENAVVTDGLDEFYGEYLDAVD FDQKLEVGDESAAAAVPITTYYEETSNYVENGGSSSEDGSNPLIDGALVTAAVPVDQQLPYAQHEEVDNNCEDVNYVGSSTKDLSIPKYEEMVDSSFVDA GGSSQFADGLSFEAFELQDNMEPGSCSEDPTDFNLEEYLDFDDLSFDPFGPLENDASSYDLSPESNKDLNGGVVNADINSENLPSMNGHASSSEQNTDAM MPKFNPMKSDFGTSYPFIGKASKMLGDIPAPPAYAAEFPVKGAALHFTSAQEASSSIRVTAGMIRIEEMGVRGNEMMFGKNMGVNVVMSITWPQGESSKT GSMSRVSLFLMLFWILVLSVSYKVGTCICAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	0	1
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	2.2	0.9100
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10032305 [exp]	2.8	0.8867
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	3.2	0.9087
AT1G03070			Bax inhibitor-1 family protein...		Lus10042631 [exp]	3.5	0.8675
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	4.2	0.8895
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	4.6	0.8753
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	5.5	0.8832
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	6.2	0.8601
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	6.3	0.8703
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	8.1	0.8685

Compare expression of checked genes

Lus10017458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.