Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11400 406 / 7e-144 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G06000 329 / 3e-113 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1) AT4G34110 62 / 1e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT5G54580 57 / 7e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G55310 58 / 9e-10 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G23830 55 / 3e-09 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G46020 54 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13570 57 / 4e-09 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT2G23350 57 / 7e-09 PABP4, PAB4 poly(A) binding protein 4 (.1) AT2G21440 57 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028823 [exp] 503 / 0 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10030482 [exp] 487 / 1e-175 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10012833 [exp] 363 / 4e-127 AT3G11400 345 / 3e-120 eukaryotic translation initiation factor 3G1 (.1.2) Lus10023758 [exp] 64 / 3e-12 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 62 / 1e-11 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 62 / 8e-11 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010370 [exp] 62 / 1e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10003593 [exp] 61 / 2e-10 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014565 [exp] 58 / 5e-10 AT1G13690 277 / 9e-97 ATPase E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060000 [exp] 441 / 2e-157 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.010G199000 [exp] 434 / 5e-155 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.002G062700 [exp] 65 / 1e-11 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.011G130300 [exp] 60 / 5e-11 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 62 / 1e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.005G198500 [exp] 62 / 2e-10 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.001G207100 [exp] 59 / 2e-10 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.001G409800 [exp] 57 / 4e-10 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G120900 [exp] 59 / 2e-09 AT2G21440 750 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G097500 [exp] 56 / 2e-09 AT1G13690 230 / 6e-78 ATPase E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [flax] [poplar] Retroviral_zf PF12353 [flax] [poplar] eIF3g Eukaryotic translation initiation factor 3 subunit G
Representative CDS sequence Show only first row Show all	>Lus10017459 pacid=23163184 polypeptide=Lus10017459 locus=Lus10017459.g ID=Lus10017459.BGIv1.0 annot-version=v1.0 ATGACGGTCGATACAGCTGCTCCGGGCAAGATCCGGTGGGGAGAATTGGAGGATGACGGCGAGGATCTGGACTTTCTATTGCCGCCTAAGGAGGTAATTG GACCCGATGAGAGCGGGATAAAGACAGTGATTCAATACAAATTTAACGATGATGGTAGCAAGGTTAAGATTACGACCACCGCGCGTGTGAGGAAGCTGGC CAAAGCCCGACTGAGTTGCCGTGCAGTGGAGCGTAGAAATTGGGCCAAGTTCGGCGACGCCGTTCGTGAGGACGTTGGGGCTCGGCTTACCATGGTTTCT ACTGAGGAGATATTGCTTGAACGGCCTAGGGCTCCAGGCACCAAAGCAGAAGAAAACAAGATGGGCGGTGATAACTTGTCTCAGCTTGGCAAAGCCGGAG CTGTACTTATGCTTTGCAGAAGCTGCGGTAAGAAGGGAGATCACTGGACATCAAGGTGTCCATACAAGGATCTCGCTGCTCCAACAGAATCATTCGTGGA TAAACCCCCAACATCCTACGCTGGTGCTGCTCCTGGAGGAGCTGGCAAGGCTGCTTATGTTCCGCCGAGCATGAGGGCGGGAGCAGAGAGAAGTGTCGGA TCAGATATGAGGAGAAGGAACGATGAGAACTCAGTTCGTGTCACCAACCTTTCGGAGGACACTCGCGAGCAAGACCTGAAGGAGCTGTTCCTACCATTCG GTCATGTAACCCGTACTTATGTTGCAATCGATCAGAACACAGGTGTGAGCCGAGGCTTTGGTTTCGTCAACTTTGCTAACAAGGAGGATGCGGAGGGGGC GATACTCAAGCTGAACGGGTATGGTTACGACAATCTTATCCTTTGTGTCGAGTGGGCCACTCCTCGAGCCAACTAG
AA sequence Show only first row Show all	>Lus10017459 pacid=23163184 polypeptide=Lus10017459 locus=Lus10017459.g ID=Lus10017459.BGIv1.0 annot-version=v1.0 MTVDTAAPGKIRWGELEDDGEDLDFLLPPKEVIGPDESGIKTVIQYKFNDDGSKVKITTTARVRKLAKARLSCRAVERRNWAKFGDAVREDVGARLTMVS TEEILLERPRAPGTKAEENKMGGDNLSQLGKAGAVLMLCRSCGKKGDHWTSRCPYKDLAAPTESFVDKPPTSYAGAAPGGAGKAAYVPPSMRAGAERSVG SDMRRRNDENSVRVTNLSEDTREQDLKELFLPFGHVTRTYVAIDQNTGVSRGFGFVNFANKEDAEGAILKLNGYGYDNLILCVEWATPRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10017459 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	5.0	0.8295
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	5.8	0.8274
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	14.0	0.8087
AT2G17350			unknown protein		Lus10026564 [exp]	17.9	0.8262
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002914 [exp]	18.4	0.7755
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10037960 [exp]	23.7	0.7929
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	25.7	0.8100
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	26.3	0.7828
AT2G17350			unknown protein		Lus10013847 [exp]	27.0	0.7916
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	28.0	0.8120

Compare expression of checked genes

Lus10017459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.