Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54840 349 / 2e-121 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G19640 228 / 7e-74 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 226 / 2e-73 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G01360 211 / 7e-66 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT5G10260 164 / 6e-49 AtRABH1e RAB GTPase homolog H1E (.1) AT4G39990 164 / 7e-49 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G16920 162 / 5e-48 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT2G22290 161 / 5e-48 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT1G09630 162 / 7e-48 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT5G65270 161 / 1e-47 AtRABA4a RAB GTPase homolog A4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028820 [exp] 400 / 1e-141 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10028821 [exp] 311 / 8e-105 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10038334 [exp] 221 / 3e-71 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10018285 [exp] 211 / 3e-67 AT5G45130 359 / 3e-128 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10040625 [exp] 208 / 4e-66 AT5G45130 355 / 6e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10034903 [exp] 199 / 1e-62 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10014336 [exp] 164 / 5e-49 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10041702 [exp] 163 / 2e-48 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10025738 [exp] 163 / 4e-48 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226300 [exp] 361 / 4e-126 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 358 / 5e-125 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.012G117800 [exp] 217 / 2e-69 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.018G079300 [exp] 216 / 5e-69 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G054900 [exp] 214 / 2e-68 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Potri.015G113000 [exp] 213 / 7e-68 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.005G122800 [exp] 210 / 4e-65 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.003G004100 [exp] 162 / 3e-48 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.007G096000 [exp] 162 / 5e-48 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.002G135500 [exp] 162 / 5e-48 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716) CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10017462 pacid=23163142 polypeptide=Lus10017462 locus=Lus10017462.g ID=Lus10017462.BGIv1.0 annot-version=v1.0 ATGGGTTGTGCTTCTTCTCTCCCAGATCGGAGTCCTGGGTCGTTGAGTGGACTAAATCCTGATTCCAGCGGGAAATCTGATGTAAATAGCCTTCGTGCAA AGCTAGTTCTATTAGGTGACTCTGGTGTGGGGAAAAGCTGCATTGTCCTTCGCTTCGTTAGAGATCAATTTGACCCAACATCTAAGGTAACTATTGGAGC CTCTTTTTTGTCACAAACATTAGCCCTCCAGGATTCCACAACAGTGAAGTTTGAAATATGGGATACTGCTGGACAAGAGAGGTACGCTGCATTGGCACCG CTCTACTATCGGGGTGCTGCAGTTGCTGTTATTGTCTATGATATAACAAGCCCAGAGTCCTTCAGGAAAGCACAGTATTGGGTTAAGGAACTTCAGAAAC ATGGGAGTCCTGATATAGTGTTGGCTTTAGTTGGTAACAAGGCCGATCTTCATGAGAAGCGGGAAGTGCCTACTCAAGATGGCATTGACTATGCTGAGAA TAATGGAATGTTTTTCATCGAGGCATCTGCGAAGACAGCAGACAATATCAAACAGCTCTTTGAGGAGATTGCCAAGCGGCTGCCTCGCCCAAAGAAAGAC ACCACCGGAATTGAGAACAGGTACTTCGACCTTATGCTGGTCCCTATTTCGATCTGCTTGGTTTCCACTCTGCTTGAATTGAAAGAAGATCAGCCATCGA ATTACTACTATCCGAGATTGGCCCGCGGGGTTGGTTTGATTTTGCAAGGGACGTGGTTTGTTCAAATGGGGATTTCGTTTTACTCCATTCTTATTGTTCA GGGCTGCACTCTGAGGGCTAGAAGTAGAGGCAACTATACTATAACCTGTAAAGGCCATCATGAGATTCACAGAGCTAATGGGATTGCCACTCTTCAGTTC AATTGCCATCTAGCATTGCTTGTGCTTTTGGCTTCTGCTTTCTATTCCACTACTATAGTCAGCAAGGCTGGTTCAGAAAGGCAGTATAAACCTATAGGAG CAGAAATGCTGCAGATGGTGGAAAGTGGTGGAAGATTCACTCTTGACTCGGATGAAGATGAGATTAGAGAAGAGGGGACTGTTGTAAAAGAAGGAGTACT TAATGGTTATGGTTCTCATGAATGA
AA sequence Show only first row Show all	>Lus10017462 pacid=23163142 polypeptide=Lus10017462 locus=Lus10017462.g ID=Lus10017462.BGIv1.0 annot-version=v1.0 MGCASSLPDRSPGSLSGLNPDSSGKSDVNSLRAKLVLLGDSGVGKSCIVLRFVRDQFDPTSKVTIGASFLSQTLALQDSTTVKFEIWDTAGQERYAALAP LYYRGAAVAVIVYDITSPESFRKAQYWVKELQKHGSPDIVLALVGNKADLHEKREVPTQDGIDYAENNGMFFIEASAKTADNIKQLFEEIAKRLPRPKKD TTGIENRYFDLMLVPISICLVSTLLELKEDQPSNYYYPRLARGVGLILQGTWFVQMGISFYSILIVQGCTLRARSRGNYTITCKGHHEIHRANGIATLQF NCHLALLVLLASAFYSTTIVSKAGSERQYKPIGAEMLQMVESGGRFTLDSDEDEIREEGTVVKEGVLNGYGSHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	0	1
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	1.0	0.9633
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	2.0	0.9308
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	2.4	0.9335
AT4G29960			unknown protein		Lus10001629 [exp]	2.4	0.9254
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	2.8	0.9352
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	3.0	0.9235
AT1G31940			unknown protein		Lus10012117 [exp]	3.3	0.9205
AT1G65020			unknown protein		Lus10024543 [exp]	4.5	0.9085
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	5.5	0.9225
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	5.7	0.9241

Compare expression of checked genes

Lus10017462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.