Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10390 1101 / 0 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 693 / 0 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G13682 650 / 0 LDL2 LSD1-like2 (.1) AT4G16310 269 / 5e-75 LDL3 LSD1-like 3 (.1) AT2G43020 156 / 2e-40 ATPAO2 polyamine oxidase 2 (.1) AT1G65840 154 / 1e-39 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 141 / 3e-35 ATPAO3 polyamine oxidase 3 (.1) AT5G13700 73 / 4e-13 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 64 / 4e-10 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028817 [exp] 1060 / 0 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10015996 [exp] 702 / 0 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 700 / 0 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10038587 [exp] 644 / 0 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10037885 [exp] 642 / 0 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10028818 [exp] 278 / 2e-88 AT3G10390 57 / 5e-10 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10033928 [exp] 290 / 9e-82 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 288 / 5e-81 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10020726 [exp] 149 / 5e-38 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035200 [exp] 1257 / 0 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 1228 / 0 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 719 / 0 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 671 / 0 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.005G235400 [exp] 286 / 1e-80 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 276 / 2e-77 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.004G075800 [exp] 159 / 2e-41 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 154 / 1e-39 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.017G144001 [exp] 153 / 3e-39 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 146 / 4e-37 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10017464 pacid=23163115 polypeptide=Lus10017464 locus=Lus10017464.g ID=Lus10017464.BGIv1.0 annot-version=v1.0 ATGAATTCGGCGACTCCACCGGCGGAAGATTTTTCTTCCCTTCCTCTGGAATTCATAACTTTCCCTCCTCTTCCTAGTCTTTGTTCCGATCTGACTCCGA ATCCAACTCCATCCCCTATCCCAGCCTCAAGCTTCGACTCCGATGCATCTCCTAACCCTAATGAATTCCTATCCTTCTCCGTCCCCAAGAAACGCCGCCG TGGCCGACCCACGCGCTCTGCCTCCGCTGCTACTACCTCCTTTCAACTTCCTCAAATTCCCTTCTTAGCGCACAAGCATAGCAACGTTGGAATGGGGATT AACCCTAATCCGAATCATAATTCCACATCGTTAACTTGGCAACAGGCGCAGGTTCCCGAAATTTCCGAGGAGATCATCGTCATCAACAGGGAAGCCACCA CGGAGGCGATAACTGCGCTTTCTGCTGGATTCCCCGCCGATTCTTTGACCGAGGAGGAAATCGAAGCTGGCGTGATTCCGGTGATCGGCGGGATTGAGCA GGTAAATTATACGCTTATTAGGAATCATATCATTTCGAAATGGAGGGAGAATATAAACAGCTGGATTACGAAAGAGATGTTCTTGAATTCGGTGCCGGCG CATTGTCATGGAATGTTGGATTCTGCTTATAATTACTTGGTTACCCGTGGATATATCAATTTCGGAGTTTCACAAGCAATAAAAGAGAAAATTCCTTCAG AGTTTAGTAAGGGGAGGGTGATCATTATTGGTGCTGGGTTGGCTGGGCTGTCTGCAGCCAAGCACTTGATGAGGTTAGGGTTTAAGATCACAGTTTTGGA AGGGAGAAAACGGCCAGGTGGAAGAGTTTACACTAAGAAAATGGAATTGGAAGGTGGTGGATCAAACAGAGTTAGTGCATCAGCTGATCTAGGAGGTAGT GTGTTGACTGGAACTTTGGGAAATCCTCTTGCGATTTTGGCAAGGCAGTTAGGATATACATTACATAAGGTGAGAGATAAGTGTCCTCTGTATAGAACTG ATGGGAAGCCAGTTGATTTAGACATGGACAGGAAAGTTGAGGCAGCTTTTAATCGGTTGCTGGATAAGGCAAGCAGGCTGAGGCAGCTGATGGGGGAGGT TTCTGTGGATGTATCGTTAGGAGCGGCTTTAGAGACGTTTAGACAGGTAGATGGGGATGCAGTGAATGAGGAGGAGATGAACTTGTTCAATTGGCATTGT GCTAATTTGGAATATGCCAATGCAGGTTTGTTGTCTAAACTTTCACTAGCATTCTGGGACCAGGATGATCCGTATGATATGGGTGGGGATCACTGTTTTC TGCCCGGAGGAAATGGAGGGTTGGTTCAGGCTTTGGCCGAAAATGTCCCTATCTTGTATGAGAAGACTGTGCATACAATCAGGTATGGTGTTGATGGCGT GCAGGTTATTGCTGGGAGTCAGACTTTTGAGGGTGATATGGTTTTGTGTACAGTTCCTCTTGGTGTTCTGAAGAGTGGTTCAGTAAAGTTCGTTCCAGAA TTGCCACAGAGGAAGCTTGAAAGCATAAAGAGGATGGGCTATGGATTGTTGAATAAAGTCGCAATGCTTTTCCCATATGTATTTTGGGAAAGTGATCTCG ATACGTTTGGTCATTTGACTGACCAGTCAAGCAATCGAGGGGAGTTCTTTTTGTTCTACAGCTATTCCACCGTCTCTGGTGGACCACTATTACTTGCACT TGTAGCAGGCGAGGCTGCTCTGAAGTTTGAGAGTATGCCTCCGGTAGATGCTGTATCACACGTTCTTCAGATTCTGAAAGGTATATATGAACCATGTGGA ATCATTGTCCCGGAGCCTATTCAAACTGTCTGTACAAGATGGGGTAGTGATTCTTTCTCTCTAGGCTCGTATTCAAATGTGGCTGTTGGGGCATCTGGAG ATGACTATGACATATTGGCGGAAAGTGTGGGGGATGGAAGACTGTTCTTTGCCGGGGAAGCCACCACTAGGCGGTACCCTGCAACTATGCATGGGGCTTT TCTTACTGGCTTAAGGGAAGCTGCTAATATTGCAAACCATGCTAATGCAAGAGCCTTAAAGATGAAGGTTAATCGTACGCCATTTAAGAACTCCCATGCC TGTGCTTCACTTCTGATGGATTTATTTAGAGAGCCAGATATAGAATTTGGTAGTTTTGCTGTTATTTTTCTTCGGAAGGATACTGATCCCAAGTCAACAG CAATTTTAAGGGTTGCTTTAAGTGAGCCTCATAAGAAGAGTCAAGAAAGTGCTAACCATGGTCAACAGCTTCGCAATAAGTTGTTATTTAAACAGCTTCA GTCACACTTTAATCAGCAACAAGAGCTTCATGTGTACACATTATTATCCAAACAACAGGCACTTGAGCTGAGAGAAGTCAGGGGAGGTGATGATGCTAGG TTGAATTATCTAGACGAAAAGTTAGGAGTAAAGTTAGTGGGGAGAAAGGGTTTAGGTCCTACGGCTGATTCACTTATTGCTTCCATTAAAGCTGAGAGGG GCAGTCGCAAGCCGACCTCTACTTCAACTCTGAAATCAGCAAATCCCAAGCTAAAAACCGGTACTTTGAAGCGGAAATTAATCAGGAGGGCTAAAATAGT AAGCAACAGCAAGATGGGACGTCCTCTCAATTCCAACATGGTAACAGGAGAAGTGTCTGGAGAAATGAAAACAACGAATCAGGCTCCCCACGAAATGTTT GGTATAGGTTTGTACACAAATAATATTTAG
AA sequence Show only first row Show all	>Lus10017464 pacid=23163115 polypeptide=Lus10017464 locus=Lus10017464.g ID=Lus10017464.BGIv1.0 annot-version=v1.0 MNSATPPAEDFSSLPLEFITFPPLPSLCSDLTPNPTPSPIPASSFDSDASPNPNEFLSFSVPKKRRRGRPTRSASAATTSFQLPQIPFLAHKHSNVGMGI NPNPNHNSTSLTWQQAQVPEISEEIIVINREATTEAITALSAGFPADSLTEEEIEAGVIPVIGGIEQVNYTLIRNHIISKWRENINSWITKEMFLNSVPA HCHGMLDSAYNYLVTRGYINFGVSQAIKEKIPSEFSKGRVIIIGAGLAGLSAAKHLMRLGFKITVLEGRKRPGGRVYTKKMELEGGGSNRVSASADLGGS VLTGTLGNPLAILARQLGYTLHKVRDKCPLYRTDGKPVDLDMDRKVEAAFNRLLDKASRLRQLMGEVSVDVSLGAALETFRQVDGDAVNEEEMNLFNWHC ANLEYANAGLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGGLVQALAENVPILYEKTVHTIRYGVDGVQVIAGSQTFEGDMVLCTVPLGVLKSGSVKFVPE LPQRKLESIKRMGYGLLNKVAMLFPYVFWESDLDTFGHLTDQSSNRGEFFLFYSYSTVSGGPLLLALVAGEAALKFESMPPVDAVSHVLQILKGIYEPCG IIVPEPIQTVCTRWGSDSFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFLTGLREAANIANHANARALKMKVNRTPFKNSHA CASLLMDLFREPDIEFGSFAVIFLRKDTDPKSTAILRVALSEPHKKSQESANHGQQLRNKLLFKQLQSHFNQQQELHVYTLLSKQQALELREVRGGDDAR LNYLDEKLGVKLVGRKGLGPTADSLIASIKAERGSRKPTSTSTLKSANPKLKTGTLKRKLIRRAKIVSNSKMGRPLNSNMVTGEVSGEMKTTNQAPHEMF GIGLYTNNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	0	1
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	3.0	0.8034
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	4.2	0.8013
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	9.2	0.7627
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	12.0	0.7162
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	12.0	0.7127
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	12.4	0.7481
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	16.9	0.7489
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	17.5	0.6833
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	18.3	0.7311
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	22.2	0.7021

Compare expression of checked genes

Lus10017464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.