Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39170 172 / 3e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028816 [exp] 457 / 1e-164 AT2G39170 176 / 1e-54 unknown protein Lus10040608 [exp] 280 / 4e-95 AT2G39170 180 / 2e-56 unknown protein Lus10018298 [exp] 241 / 3e-80 AT2G39170 163 / 6e-50 unknown protein Lus10037961 [exp] 123 / 7e-35 AT2G39170 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227400 [exp] 228 / 2e-74 AT2G39170 214 / 2e-69 unknown protein Potri.008G035000 [exp] 224 / 1e-72 AT2G39170 196 / 1e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10167 [flax] [poplar] BORCS8 BLOC-1-related complex sub-unit 8
Representative CDS sequence Show only first row Show all	>Lus10017465 pacid=23163207 polypeptide=Lus10017465 locus=Lus10017465.g ID=Lus10017465.BGIv1.0 annot-version=v1.0 ATGCATGGATTCTCCACTGTAGATGGATTCGTGGAGATAACCGAATGCATGGCCGAGATGATCAAGTACGTAGCGAACGAACCCTCCGTAGGGCTTTACT ACGTGCAGCGGCATGTGCAGAATGCAGGTCCGAACGTCATCAACATCAGGAAGAGCCTAATTGAGAGGTCCCGCGAAACAAGCTTGAACACCGAAGACAT GGAGGATTCAATCACTATGGTGAGATCAATGAAAGAATGCGGGCTGTCCATTGCGAACGAGATGATCAACGACATCAAGAAGTCTCTCCTGATAATGTCC GAGAAGCAGCAGCAGAAGGGAGGGACGGTTTCGAATTCGTCGTCTGGGTTCTTCACGAGACGGTCCAGCTCGACTGATACCGATGAAACTGTTTCCTTAA ATGATCTTAAGATTTCAGGTGACTATATCTCCACCATGTTTAAGACGGCAAAGGAGAAGGCCAGCGGTTTCAAGTGGCCGCAGATTGACCTGAAGGATAC GTTGCCGAGTTTTAGTCCTTCGCAGTTCATTGCATCCACCAGTGCGAGATATTCTGCTGGTAAAGCTGAAGAACAGCTTGCTTCATCTTCATATCTGACA GCTGCAGAAGAGCTTGAAAGTGACCCGAAAGATGAGCAACTGGGAATGAGCTCGAGCTCCTCCCCACATGGCAATGTAATTTCAGGGCCAGAAGATTATG ATGTTTTCAAGGCTACTAGAGAAGCGAAGCTAGAGGAATGGCTGGTGGAGACTGCTGATAAATTGCGAGATAAATTGCCTCGAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10017465 pacid=23163207 polypeptide=Lus10017465 locus=Lus10017465.g ID=Lus10017465.BGIv1.0 annot-version=v1.0 MHGFSTVDGFVEITECMAEMIKYVANEPSVGLYYVQRHVQNAGPNVINIRKSLIERSRETSLNTEDMEDSITMVRSMKECGLSIANEMINDIKKSLLIMS EKQQQKGGTVSNSSSGFFTRRSSSTDTDETVSLNDLKISGDYISTMFKTAKEKASGFKWPQIDLKDTLPSFSPSQFIASTSARYSAGKAEEQLASSSYLT AAEELESDPKDEQLGMSSSSSPHGNVISGPEDYDVFKATREAKLEEWLVETADKLRDKLPRSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39170			unknown protein		Lus10017465 [exp]	0	1
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	2.6	0.8252
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	3.7	0.8184
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	9.2	0.8071
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	10.6	0.8070
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	14.9	0.7873
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	18.9	0.7980
AT3G62450			unknown protein		Lus10021958 [exp]	20.0	0.8058
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	20.3	0.7930
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	20.7	0.7915
AT1G69960		PP2A	serine/threonine protein phosp...		Lus10004252 [exp]	22.7	0.7876

Compare expression of checked genes

Lus10017465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.