Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10410 687 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 637 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 577 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 176 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) AT1G15000 169 / 1e-46 SCPL50 serine carboxypeptidase-like 50 (.1) AT4G12910 163 / 4e-44 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 161 / 3e-43 SCPL21 serine carboxypeptidase-like 21 (.1) AT3G17180 157 / 5e-42 SCPL33 serine carboxypeptidase-like 33 (.1) AT1G73300 146 / 2e-38 SCPL2 serine carboxypeptidase-like 2 (.1) AT2G23010 144 / 8e-38 SCPL9 serine carboxypeptidase-like 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037958 [exp] 833 / 0 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 811 / 0 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 587 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10041338 [exp] 401 / 1e-136 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 398 / 4e-135 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 202 / 2e-62 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10042334 [exp] 181 / 7e-51 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 179 / 3e-50 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 168 / 4e-46 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034800 [exp] 755 / 0 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 735 / 0 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 646 / 0 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.005G060100 [exp] 183 / 1e-51 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.009G006701 [exp] 162 / 1e-47 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.008G129800 [exp] 169 / 9e-47 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 163 / 1e-44 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.012G105500 [exp] 150 / 1e-39 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 150 / 1e-39 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.005G091800 [exp] 149 / 2e-39 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10017466 pacid=23163169 polypeptide=Lus10017466 locus=Lus10017466.g ID=Lus10017466.BGIv1.0 annot-version=v1.0 ATGCCTTTTCCCCTTACTGCTGTCATCAAAATGTTGAAGTCGTCGACGGCGTCGTTTCAGCTCCCGGTCTTCCTCCTTCTGTCGCTTCTGCTGTGTTCTT CGGCAGCGGAGGAGGATTTTGCTGACTTGGCCAAGTCCAATTTCCCGTCTGTTCAGGCCCAGAAGTTCATCAGGGATCTCAATCTCTTCCCCAAGGAGGA TGTCAATGTCGTGAAAGCTTTCGGTGGACTCGTCGGTGACTCTCCGCCTACCGGGAAGAAGATCGTCGAGAAGCGTCTCAAGTTTCCGAACTTGGTTGGA GAAGGTAAGGATGGTTACGCCGCCTTCGAGGATTTGGGCCACCACGCTGGTTACTACAACATTGAGCATTCTCATGCCGCCAAGTCAGATGTTTTACTTC TTCTTCGAATCCCGCAACAGCAAGAAGGACCCAGTGGTCATCTGGTTGACTGGGTGGTCATCTGGCTGACTGGGGGACCTGGCTGTAGCAGTGAGCTGGC TATCTTCTATGAAAATGGCCCTTTCAGCATTGCAAATAACATGTCTCTTGTTTGGAACAAGTATGGCTGGGATCAGGCATCAAATCTTATATATGTTGAT CAGCCGACTGGGACTGGGTTCAGCTATAGCTCTGACAAACGTGACCTTCGACACGATGAAGATGGAGTTAGCAATGACCTCTATGACTTCCTGCAGGCCT TTTTCAAAGAGCATCCTGAACTGGCAAAGAATGACTTCTACATTACTGGAGAATCATATGCTGGTCACCACATTCCTGTTTTTGCTTCTCGAGTTCATAG AGGGAACAAAAATAACGAAGGGATCCACATTAACTTCAAGGGATTTGCCATCGGAAATGGCCTTACAGATCCTGGAGTGCAGTATAAGGCTTACCCAGAT TATGCACTAGAGAATGGGATAATCAAGAAAGCACAATATGATAAAATTACCAAGATGATCCCGGTGTGTGAGATGGCTATTAAGCTTTGCGGGACGGACG GGTCGATCTCTTGTATGGCATCCTATTACGTTTGCACTGGCATATTCAATTCTATAATGTCTGCTGCTGGTGGTATAAATTATTACGATATCCGGAAGCA ATGTGAAGGGAGCCTTTGCTATGACTTCTCCAACATGGAAAAATTCCTCAACCTGAATAGCGTTAGGGAATCGCTCGGCGTGGGGGATATAGACTTTGTG TCGTGCAGCCCAACTGTCTACGAGGCCATGTTGATGGACTGGATGAAGAACCTCGAAGTGGGAATCCCTGCTCTCCTTGAAGATGGAATCAAAATGCTTA TATATGCTGGAGAATATGACCTCATCTGCAATTGGCTCGGTAATTCGCGATGGGTTCACAGCATGGAGTGGTCTGGCCAGAAAAAGTTTGCGGCTTCTCC CGAAATCTCATTTCAAGTTGACGGTTCGGAGGCTGGTGTGATGAAAACTCTTGGACCCCTGACCTTCCTCAAGGTCCACAATGCCGGGCACATGGTTCCG ATGGACCAGCCGAAGGCTGCATTGGAGATGCTGAAGAAGTGGACTCAAGGCAAACTAGCTGATGCCGACGAATCCAATCCTGAAAGTCTAGTTGCCGAGT TTTGA
AA sequence Show only first row Show all	>Lus10017466 pacid=23163169 polypeptide=Lus10017466 locus=Lus10017466.g ID=Lus10017466.BGIv1.0 annot-version=v1.0 MPFPLTAVIKMLKSSTASFQLPVFLLLSLLLCSSAAEEDFADLAKSNFPSVQAQKFIRDLNLFPKEDVNVVKAFGGLVGDSPPTGKKIVEKRLKFPNLVG EGKDGYAAFEDLGHHAGYYNIEHSHAAKSDVLLLLRIPQQQEGPSGHLVDWVVIWLTGGPGCSSELAIFYENGPFSIANNMSLVWNKYGWDQASNLIYVD QPTGTGFSYSSDKRDLRHDEDGVSNDLYDFLQAFFKEHPELAKNDFYITGESYAGHHIPVFASRVHRGNKNNEGIHINFKGFAIGNGLTDPGVQYKAYPD YALENGIIKKAQYDKITKMIPVCEMAIKLCGTDGSISCMASYYVCTGIFNSIMSAAGGINYYDIRKQCEGSLCYDFSNMEKFLNLNSVRESLGVGDIDFV SCSPTVYEAMLMDWMKNLEVGIPALLEDGIKMLIYAGEYDLICNWLGNSRWVHSMEWSGQKKFAASPEISFQVDGSEAGVMKTLGPLTFLKVHNAGHMVP MDQPKAALEMLKKWTQGKLADADESNPESLVAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	1.4	0.9548
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	2.2	0.9116
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	6.3	0.8878
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	6.7	0.9004
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	8.5	0.8961
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10022349 [exp]	8.5	0.9100
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	10.0	0.9273
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	10.6	0.9238
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	10.7	0.9258
AT4G22758			unknown protein		Lus10000386 [exp]	11.0	0.8929

Compare expression of checked genes

Lus10017466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.