Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 208 / 4e-62 HXXXD-type acyl-transferase family protein (.1) AT1G24430 187 / 2e-54 HXXXD-type acyl-transferase family protein (.1) AT4G15390 172 / 2e-48 HXXXD-type acyl-transferase family protein (.1) AT1G24420 162 / 1e-44 HXXXD-type acyl-transferase family protein (.1) AT3G30280 148 / 1e-39 HXXXD-type acyl-transferase family protein (.1) AT5G47950 142 / 2e-37 HXXXD-type acyl-transferase family protein (.1) AT5G47980 140 / 6e-37 HXXXD-type acyl-transferase family protein (.1) AT5G23970 130 / 2e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15400 127 / 2e-32 HXXXD-type acyl-transferase family protein (.1) AT1G03390 96 / 5e-21 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028814 [exp] 905 / 0 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 319 / 1e-104 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 317 / 6e-104 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 295 / 2e-95 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 288 / 9e-93 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 232 / 4e-71 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 232 / 9e-71 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 229 / 8e-70 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 228 / 1e-69 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 384 / 5e-130 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 378 / 1e-127 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 361 / 3e-121 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 330 / 4e-109 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 276 / 4e-88 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 274 / 2e-87 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 274 / 2e-87 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 274 / 3e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 274 / 3e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 273 / 3e-87 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10017468 pacid=23163103 polypeptide=Lus10017468 locus=Lus10017468.g ID=Lus10017468.BGIv1.0 annot-version=v1.0 ATGGCGACCAGCAGTTTCCAAGTGGAAATCACTTCTAGAGAAACAATCAAGCCATCTTCCCCTACAATTCACCTCAACAAGCCATACAGCCTCTCCTGCT TCGACCAGCTCGTCCCATCCACCTACATTCCCCTTCTCATCTTCCACTCCTTAGCCAACGCGAATTTCGACATCTCTCATGTCATCGAGCACGCCAAATT CTGCCTCTCCGAGACCCTCAACGTCTTCTACCCTCTCTCTGGCAGGATCCGACACAATTCCTCCGTCGGAAGCTTCGACTCCGGCGTTCCTTTCCTCATC GCCAAAGTTACCTCCCCTCTTTCACATTTCCTCGATTCTCACCAGCACAACGGAAGCTACCTCAACCAGCTCCTCCCTTGTCATCCCTTCGCAAGGGAAC GGCAGGAAGACATCCCACTGATGGCTTTCCAGTTGAGTATATTCTCCTGTGGTGGAATTGCCCTGGGCTGTGGCATGTGCCACAAGATTGGCGATTCCGC CACGGGACTGGCCTTTGCAAGGACTTGGGCGGCTTTCTTCAGCGGATCCCGCCGAAGAATTGCCCGCCCTGACTTTGTCAAGGCGTCTTCCCATTTCCCT TCTAGATCCCCGATGCCCGAGCGGTACACTTCCTTAATCGAGAAGATGTGGTTCAGGGACACGAATTTCGTCACCAAGAGGTTCTTCTTCAACCCGGAAT CCATCGCCTCCCTCCGTCAGGAATCCCGCGACGGATCCTCCATGACGCTGGCTCTACCAACCAGCGTCGAGGCTCTGTCAGGTTTTGTCTGGAAATGCTT CATATCAGCATCCAGAAAGGCTGCGGCCCTATCTGGGTCGCCGCCAAAACCTTCCATGCTAGCCCTGGAAGTGAACCTGAGGAAGAGATGTAACCCGGGA CAGCTCGAAGCAGCATTCGGGAACCTGTTCTGGCCGGCGACAGCTGTCGTGGGGCCAGAACAAAGCTCCATCAGCCTTCAGGAATTGGTGAGGCTGATCA GCGATGCGGTGGCTGAATTCGACGAGGAGTATGTGAAGAGCCTGCAAGGGGAAGAAGGGTTGGAGAACATTTCGAGGAGCCTGGATTCTTTACAGGAGAT GCTGGAGATGGAACCTGACGTTCTGGAAATAGGGAGCGTGTGCAATCTGGGGATGGATCAGATGGATTTTGGAGCAGGGGACCCGGGAATGGCGACGATA GGAGATGTTAGGAAGGAGTTCAGCAACTTTGTGATCCTGGCGGAGGCCAGGCTTGGGAAAGGGATCGAAGCTTGGATGATCATTGAAGAAAGCAAGATGG GATTCCTGGAGAGAGATCCTGAGTTTCTCAAGTTTGCTGTCCCCATCACTAGCATCAAGATGTCCAAATTGTGA
AA sequence Show only first row Show all	>Lus10017468 pacid=23163103 polypeptide=Lus10017468 locus=Lus10017468.g ID=Lus10017468.BGIv1.0 annot-version=v1.0 MATSSFQVEITSRETIKPSSPTIHLNKPYSLSCFDQLVPSTYIPLLIFHSLANANFDISHVIEHAKFCLSETLNVFYPLSGRIRHNSSVGSFDSGVPFLI AKVTSPLSHFLDSHQHNGSYLNQLLPCHPFARERQEDIPLMAFQLSIFSCGGIALGCGMCHKIGDSATGLAFARTWAAFFSGSRRRIARPDFVKASSHFP SRSPMPERYTSLIEKMWFRDTNFVTKRFFFNPESIASLRQESRDGSSMTLALPTSVEALSGFVWKCFISASRKAAALSGSPPKPSMLALEVNLRKRCNPG QLEAAFGNLFWPATAVVGPEQSSISLQELVRLISDAVAEFDEEYVKSLQGEEGLENISRSLDSLQEMLEMEPDVLEIGSVCNLGMDQMDFGAGDPGMATI GDVRKEFSNFVILAEARLGKGIEAWMIIEESKMGFLERDPEFLKFAVPITSIKMSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	0	1
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	1.0	0.9987
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	1.4	0.9901
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	3.0	0.9537
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	3.9	0.9259
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	7.3	0.8805
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	8.5	0.8506
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	8.5	0.9313
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	9.8	0.9031
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	12.5	0.8413
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	15.2	0.8943

Compare expression of checked genes

Lus10017468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.