Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 216 / 2e-65 HXXXD-type acyl-transferase family protein (.1) AT3G26040 183 / 9e-53 HXXXD-type acyl-transferase family protein (.1) AT5G47950 167 / 1e-46 HXXXD-type acyl-transferase family protein (.1) AT1G24420 160 / 3e-44 HXXXD-type acyl-transferase family protein (.1) AT3G30280 159 / 7e-44 HXXXD-type acyl-transferase family protein (.1) AT5G23970 155 / 2e-42 HXXXD-type acyl-transferase family protein (.1) AT4G15390 144 / 3e-38 HXXXD-type acyl-transferase family protein (.1) AT5G47980 136 / 2e-35 HXXXD-type acyl-transferase family protein (.1) AT4G15400 119 / 3e-29 HXXXD-type acyl-transferase family protein (.1) AT3G48720 106 / 9e-25 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028813 [exp] 757 / 0 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 539 / 0 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 525 / 0 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 295 / 2e-95 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 290 / 2e-93 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10037952 [exp] 277 / 1e-90 AT1G24430 130 / 5e-35 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 244 / 5e-76 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 238 / 2e-73 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 238 / 3e-73 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 444 / 5e-154 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 439 / 2e-151 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 410 / 2e-140 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 385 / 4e-131 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 273 / 6e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 273 / 6e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 271 / 3e-86 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 271 / 3e-86 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 268 / 4e-85 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 266 / 1e-84 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10017469 pacid=23163143 polypeptide=Lus10017469 locus=Lus10017469.g ID=Lus10017469.BGIv1.0 annot-version=v1.0 ATGGAGGTAAGAATCGTTTCAAAGGAAGTAGTACAGCCATCTTCCCCTGAAATCACAGAGACCAAACCTCCACACAAGCTCTGCCTTTTCGACCAGCTCA CTCCCTTAACCTTCGTCCCCATCATCCACTTTTACCCATACAGCACCACCATTGCCAACAATAGCCATAGCATCATCCCTCACCTGAAGCGCTCCCTTTC CCGAGCTCTGGACATCTACTATCCTTTCTCTGGCAGGACCGACTCTTCGAATTTGTTCGTCCACAGCTTCAACAAAGGTCTCCCTTTCACTCACGCCCAA GTCAATTCCAACCTTTCCCATTTCCTGAAGCTCCACCAGCACAACACCGAGCTTCTCAACCTCTTCCTCCCCCGTCAGCCGTTCCAGAAAGAAGAAGGAT CGGATAATGAAGAATACCCTGTTGTGGAGCTTCAAGTCTCTGTTTTCTCCTGCGGTGGAATCGCATTGGGTTGGACTGTTTCCCACAAGTTGATCGATGG ATCCACTCTGGATTCCTTTATCACCACTTTCTCCGCATTTTCCCGTGGTTTCCCAAACGAAGTCGTTTCTCCCAATTTCTCCCTCGCGGCGGAGCTCTTC CCTCCGAGAAACCCTCCCCCTGAAACATTTGTCAAGTTCCTGAAGACCCTCTGGTTTACCGAAGCAAATTATGTCACTAGACGATTCGTTTTCTCTTCAT CTTCAATTTCTCGGATTAAATCCATGGTTCCGATTAAGCTGTCCAGAGTGAATGCCCTGTCCTGCTTTATATGGCAACGCGCCATGGAAGCATTGTTGGT TGTCTCCTCATCCGTCAACGGCGAGAGGACGTCGGTTCTGGTGGAGGCGGTGAACATGAGGAATGCGACGAACCCACCGCTGCCGCAGGGGTCGGTAGGG AACTTGTTCTGGTGGGCGACCGCAGTGGCAAGTTCGGACAAGGAGATCGCGGAGCTTGGGAGCATGGTGAGCGAGGCAGTCGGGGTGTACCGGTCCGATT CCGGCTACGTGGAGTCGATCCAGGGGGAGAGCGGGTACGATTCAGTGTCGGGTTACTTCGAGCAACTGGAAGCTATGGTGTCTCAGGAAGGGGAGGTGGA CATAGTGGCATTCACTTGCTGGACCGGGTTCAGGTACACAGCCCTTGATTTCGGGTGGGGGAAACCCATTTGGGCGACTGTGATGGGGAAAGTGGGTCGG GCTTTTCGGAATTTCACGGTTTTAATGGATTCGGGTGATGGGAATGGAGGGATTGAGGCTTGGGTTACCTTAGAAGAGAAAAGGATGAGTGTTCTTGAAC GAGATGCTGAGTTTTTGAAGTTCGCTTCTCCAAATCCTAGGATTTCCAACCTTTGA
AA sequence Show only first row Show all	>Lus10017469 pacid=23163143 polypeptide=Lus10017469 locus=Lus10017469.g ID=Lus10017469.BGIv1.0 annot-version=v1.0 MEVRIVSKEVVQPSSPEITETKPPHKLCLFDQLTPLTFVPIIHFYPYSTTIANNSHSIIPHLKRSLSRALDIYYPFSGRTDSSNLFVHSFNKGLPFTHAQ VNSNLSHFLKLHQHNTELLNLFLPRQPFQKEEGSDNEEYPVVELQVSVFSCGGIALGWTVSHKLIDGSTLDSFITTFSAFSRGFPNEVVSPNFSLAAELF PPRNPPPETFVKFLKTLWFTEANYVTRRFVFSSSSISRIKSMVPIKLSRVNALSCFIWQRAMEALLVVSSSVNGERTSVLVEAVNMRNATNPPLPQGSVG NLFWWATAVASSDKEIAELGSMVSEAVGVYRSDSGYVESIQGESGYDSVSGYFEQLEAMVSQEGEVDIVAFTCWTGFRYTALDFGWGKPIWATVMGKVGR AFRNFTVLMDSGDGNGGIEAWVTLEEKRMSVLERDAEFLKFASPNPRISNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	0	1
AT5G13620			unknown protein		Lus10017168 [exp]	9.9	0.9986
					Lus10033811 [exp]	14.1	0.9986
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	15.2	0.9941
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	17.2	0.9986
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Lus10008767 [exp]	17.2	0.9793
					Lus10016593 [exp]	19.9	0.9986
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	20.2	0.9422
					Lus10014857 [exp]	22.2	0.9986
AT1G57790			F-box family protein (.1)		Lus10024904 [exp]	22.8	0.9093
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	23.7	0.9470

Compare expression of checked genes

Lus10017469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.