Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 507 / 1e-179 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 415 / 2e-143 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G12420 62 / 3e-10 ACR8 ACT domain repeat 8 (.1) AT1G69040 52 / 6e-07 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 49 / 6e-06 ACR6 ACT domain repeat 6 (.1) AT1G76990 47 / 2e-05 ACR3 ACT domain repeat 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023921 [exp] 543 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 539 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 510 / 0 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 431 / 1e-149 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 394 / 4e-135 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 387 / 1e-132 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 325 / 1e-108 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10036827 [exp] 56 / 4e-08 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 52 / 5e-07 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228500 [exp] 679 / 0 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 669 / 0 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 576 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 568 / 0 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G237100 [exp] 441 / 9e-154 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 428 / 1e-148 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 426 / 6e-148 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.003G116600 [exp] 67 / 6e-12 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 63 / 1e-10 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.002G074800 [exp] 47 / 1e-05 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10017470 pacid=23163107 polypeptide=Lus10017470 locus=Lus10017470.g ID=Lus10017470.BGIv1.0 annot-version=v1.0 ATGGGGATATTGCATGAAGATGTGGTGTTGATTAATCAAGCTGAGAAAGCCGGTGAATCTACTGTGATTACTGTCAATTGCCCTGATAAAACTGGGCTGG GGTGTGATTTGTGCAGGGTTATTCTCCTCTTTGGCCTCAGCATTTCCAAAGGAGATTTTCAAACGGATGGGAAATGGTGTTACATAGTGTTTTGGGTGGT GGGGAAGCAGAAAACAAGGTGGAATTTGTTGAAGAAGAGATTACTTGAGGTGTGTCCTTCCTACTTCTCCACATCAAGGATCTACTACTATCGTCCAGAG AATCAGCAGCCTACCCCACCAAACGTTTTCCTCTTGAAGTTCTGGTGTTCTTGTGATCGGAGAGGCCTCCTGCATGATGTCACGGAGGTTCTTTGCGAGC TGGAACTTACCATAAAAAGTGTGAAGGTTTCCACAACCCCAGATGGAAGAGTTTTGGACCTCTTCTTTGTCACTGATGCTAGAGAGCTGCTCCACACAAA AAAGAGACAGGAGGAGACATTCAGCCGTCTGAAAGATGTGTTAGGCGATGCATTGACAAGTTACGAGATCGAGTTGGTTGGTACCGAGATAGCTACTGCG TGTTCGCAAGTATCTTCATTTCTTCCTTCTGCAATCACAGCAGACATGTTCAGCTTGGAGCTACCTGACGACAAGCGACAACAAAGCGGTTTTTTCGCTT CCACTCCGGTTTCCGTGACAGTGGACAACACCCTCAGTCCCTCTCACACCCTTGTCCAGATCTTCTGCAAGGATCACAAGGGCCTCATTTACGATATCAT GCGAACCCTAAAGGATTACAACATACAGATTTCATATGGGAGGTTCTTTGCAAATCCCAGAGGGAACTGTGAGGTAGACTTGTTCATAATGCAAGCAGAT GGTAAAAAGATGGTTGACCCCAACAAACAGAATGCATTATGCTCCCGTTTAAGAATGGAGCTTCTGAATCCTCTTCGTGTAGCAGTGGTAAGTACAGGCC CCGACTCAGAACTTCTCGTCGCAAACCCTGTTGAACTTGCTGGCAGGGGACGGCCTCTTGTCTTCCATGATATCACCCTGGCACTCAAGATGCTCAATGC CCGTGTCTTCTCGGTGAAGATTGGAAGGTACATGATTCATGACAGGGAATGGGAAGTGTATAGAGTGCTGCTGGATGAAGGGGAAGGTCCAACTGTGCCA AAGATGAAGATAGAGGAAGGTGTGAAGAAGATATTAATGGGCTGGGATTAG
AA sequence Show only first row Show all	>Lus10017470 pacid=23163107 polypeptide=Lus10017470 locus=Lus10017470.g ID=Lus10017470.BGIv1.0 annot-version=v1.0 MGILHEDVVLINQAEKAGESTVITVNCPDKTGLGCDLCRVILLFGLSISKGDFQTDGKWCYIVFWVVGKQKTRWNLLKKRLLEVCPSYFSTSRIYYYRPE NQQPTPPNVFLLKFWCSCDRRGLLHDVTEVLCELELTIKSVKVSTTPDGRVLDLFFVTDARELLHTKKRQEETFSRLKDVLGDALTSYEIELVGTEIATA CSQVSSFLPSAITADMFSLELPDDKRQQSGFFASTPVSVTVDNTLSPSHTLVQIFCKDHKGLIYDIMRTLKDYNIQISYGRFFANPRGNCEVDLFIMQAD GKKMVDPNKQNALCSRLRMELLNPLRVAVVSTGPDSELLVANPVELAGRGRPLVFHDITLALKMLNARVFSVKIGRYMIHDREWEVYRVLLDEGEGPTVP KMKIEEGVKKILMGWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10017470 [exp]	0	1
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	5.3	0.7726
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	10.0	0.7638
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	11.7	0.7457
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	13.0	0.7441
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	14.9	0.7363
					Lus10003561 [exp]	18.0	0.7390
AT5G35460			unknown protein		Lus10017161 [exp]	21.8	0.7576
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	22.5	0.7384
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10027172 [exp]	23.9	0.7415
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	25.1	0.7144

Compare expression of checked genes

Lus10017470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.