Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36670 67 / 3e-12 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16120 65 / 1e-11 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT3G18830 63 / 8e-11 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16130 63 / 9e-11 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G18480 59 / 1e-09 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 54 / 1e-07 AtPLT4 Major facilitator superfamily protein (.1) AT1G50310 45 / 3e-05 ATSTP9 sugar transporter 9 (.1) AT5G16150 44 / 0.0001 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G19450 41 / 0.0009 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002981 [exp] 136 / 8e-39 ND 40 / 1e-07 Lus10042339 [exp] 76 / 7e-15 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10026328 [exp] 74 / 1e-14 AT3G18830 219 / 2e-66 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 72 / 1e-13 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 70 / 6e-13 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 69 / 1e-12 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 68 / 2e-12 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 66 / 8e-12 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10023640 [exp] 66 / 1e-11 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151725 [exp] 76 / 5e-15 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 71 / 2e-13 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 69 / 6e-13 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 68 / 2e-12 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 64 / 6e-11 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 59 / 2e-09 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 48 / 4e-06 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.017G032200 [exp] 47 / 1e-05 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 45 / 4e-05 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.007G024300 [exp] 44 / 8e-05 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10017474 pacid=23163185 polypeptide=Lus10017474 locus=Lus10017474.g ID=Lus10017474.BGIv1.0 annot-version=v1.0 ATGATGAAGTCAGAGATGTTCGCTCGGGTTGCTTCCCTTCCCTTTTTGATAATAGGATTTGGTAATACAATGGTGGATTCGGGATGGGCGCTGCTGATGG AGAATCTGAAGATCGGCGACTTGCACACCATTCTGTTGGTCGTGCTCGGGAACATCTCTACGGTGCTTAGCTCCCTAGTAGCCGGCGCTCGTGCCAACTA CTACGGGAGAAAGAGACCGTTTGCTGCAATGGGACCAATGTTGGTAGTTGGAAGCCTCGTCAAGGAATTTGGGGCCTCTTCTTACACCGCCCTCCTCATC GCCCACATGCTCACTTGCCTCGGTGTTGGATTTGCCTTCACCACTGGCCCCATCTATATTGCTGAGTTGTATTCTCATCCCCTCCCAGCAGCGCTGGCAC ATACCATCATATTCAGAATAGATGCTCTCTTACCTTTCGTGCTTGTCGTATGCCTTCTAACCATGCATGAATCTCCGTACTGGCTTTTAATGAACGGAAA CCAAACTCATAAAGCCATGGAAGTATTAGAAAACAGTAAACGAATTCCCATCGAAACCGACCAAATCATACAAGCAATGGAACTGATAAATAATGGTAAG TATAACCCACCACCACCTGGCCTCCTCGCAAGAGTTTGGTATTGTTTAGCCCTTGTGTGGAATAACAACTTCATTCATAATCTCCGCCTCCGCCGCATTC TGGTTTCCGTCCTAGGGATTATGGGATCGTTTGAGTTGGGATTAGGGCCAGTTACTTGGTTCTACACCATTGAAGCATTTGACCACAAGTCAAGAGCTCA AGGTGTGAGTTTTGCTGTGGTGATTAACAGAGTGTTCTATACCATTCGGGTTGTATTGTTTTTTCATTTAAATGGGAGGTTAGGAGGACTTGATGGTGTC GGTGGGCTGCTCTTTTGTAAAAAGTTTGTAGTAGAGAAATCTAGGGAAATTCTTAAATGCAAGAAGTAA
AA sequence Show only first row Show all	>Lus10017474 pacid=23163185 polypeptide=Lus10017474 locus=Lus10017474.g ID=Lus10017474.BGIv1.0 annot-version=v1.0 MMKSEMFARVASLPFLIIGFGNTMVDSGWALLMENLKIGDLHTILLVVLGNISTVLSSLVAGARANYYGRKRPFAAMGPMLVVGSLVKEFGASSYTALLI AHMLTCLGVGFAFTTGPIYIAELYSHPLPAALAHTIIFRIDALLPFVLVVCLLTMHESPYWLLMNGNQTHKAMEVLENSKRIPIETDQIIQAMELINNGK YNPPPPGLLARVWYCLALVWNNNFIHNLRLRRILVSVLGIMGSFELGLGPVTWFYTIEAFDHKSRAQGVSFAVVINRVFYTIRVVLFFHLNGRLGGLDGV GGLLFCKKFVVEKSREILKCKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001671 [exp]	3.2	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	5.1	1.0000
					Lus10002449 [exp]	6.6	1.0000
					Lus10002009 [exp]	6.9	1.0000
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10028107 [exp]	7.3	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	7.7	1.0000
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10028665 [exp]	7.9	1.0000
AT1G45191		BGLU1	beta glucosidase 1, Glycosyl h...		Lus10030372 [exp]	8.1	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	8.8	1.0000
					Lus10003763 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10017474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.