Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55670 208 / 3e-70 PSAG photosystem I subunit G (.1) AT1G30380 43 / 1e-05 PSAK photosystem I subunit K (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028806 [exp] 262 / 1e-91 AT1G55670 214 / 1e-72 photosystem I subunit G (.1) Lus10041966 [exp] 221 / 2e-75 AT1G55670 209 / 1e-70 photosystem I subunit G (.1) Lus10017974 [exp] 221 / 3e-75 AT1G55670 209 / 1e-70 photosystem I subunit G (.1) Lus10012086 [exp] 42 / 3e-05 AT1G30380 174 / 3e-57 photosystem I subunit K (.1) Lus10007399 [exp] 42 / 3e-05 AT1G30380 174 / 1e-57 photosystem I subunit K (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471900 [exp] 197 / 4e-66 AT1G55670 209 / 3e-70 photosystem I subunit G (.1) Potri.011G168700 [exp] 192 / 5e-64 AT1G55670 206 / 5e-69 photosystem I subunit G (.1) Potri.006G254200 [exp] 40 / 6e-05 AT1G30380 176 / 3e-58 photosystem I subunit K (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01241 [flax] [poplar] PSI_PSAK Photosystem I psaG / psaK
Representative CDS sequence Show only first row Show all	>Lus10017476 pacid=23163110 polypeptide=Lus10017476 locus=Lus10017476.g ID=Lus10017476.BGIv1.0 annot-version=v1.0 ATGGCAACTTCTTCAGCTATGTTCCTCGCCTCACCGATCCAAACCCACCAAACTCCTCTCAGGAGATCCTCCACCGCCGCCTTCAGAACCAACACTTCCC TCCGTCGTCGGAGCGTGGCTGTGAAAGCCGAGCTGAGCCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCACTGTTCTTAGGGAGGTTCGTGTTCTT CAACTTCCAGAGGGAGAACATTGCCAAGCAAGGGCTGCCAGTGCAGAACGGCAAGACCCATTTCGAGGCCGGCGACGTCCGTGCTAAGGAGTACGTTAGC CTGCTCAAGTCCAACGACCCTGTTGGCTTCAACATCGTTGATGTTCTTGCTTGGGGATCCATTGGCCATATCGTTGCTTACTACATCTTGGCCACTACCA GCAACGGATACGATCCCAAGTTCTTCTAG
AA sequence Show only first row Show all	>Lus10017476 pacid=23163110 polypeptide=Lus10017476 locus=Lus10017476.g ID=Lus10017476.BGIv1.0 annot-version=v1.0 MATSSAMFLASPIQTHQTPLRRSSTAAFRTNTSLRRRSVAVKAELSPSVVISLSTGLSLFLGRFVFFNFQRENIAKQGLPVQNGKTHFEAGDVRAKEYVS LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATTSNGYDPKFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	0	1
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	1.0	0.9807
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	2.6	0.9535
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	3.2	0.9574
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10011361 [exp]	3.2	0.9742
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	3.5	0.9552
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	4.2	0.9607
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	4.5	0.9579
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	6.9	0.9524
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	7.2	0.9487
AT5G40500			unknown protein		Lus10002519 [exp]	7.8	0.9062

Compare expression of checked genes

Lus10017476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.