Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16050 335 / 1e-116 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G20990 98 / 1e-23 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37800 85 / 9e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 81 / 1e-17 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37810 75 / 6e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G27660 72 / 6e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37780 64 / 1e-11 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G42060 61 / 7e-11 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 61 / 1e-10 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44400 55 / 3e-09 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028723 [exp] 91 / 1e-20 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G110500 [exp] 366 / 3e-129 AT2G16050 338 / 6e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G149500 [exp] 364 / 2e-128 AT2G16050 339 / 3e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G209200 [exp] 255 / 2e-85 AT2G16050 278 / 1e-94 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.009G170201 [exp] 171 / 7e-53 AT2G16050 165 / 3e-51 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G205200 [exp] 139 / 8e-40 AT2G16050 159 / 3e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G205100 [exp] 135 / 2e-38 AT2G16050 149 / 2e-44 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.008G055200 [exp] 132 / 4e-37 AT2G16050 147 / 2e-43 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G204600 [exp] 129 / 5e-36 AT2G16050 151 / 7e-45 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 100 / 1e-24 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 79 / 6e-17 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF03107 [flax] [poplar] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Lus10017477 pacid=23163102 polypeptide=Lus10017477 locus=Lus10017477.g ID=Lus10017477.BGIv1.0 annot-version=v1.0 ATGAAATACAGCGAGATATCTCACTTCAGCCATCCACAGCACAAGCTAAGGTACGAGTTCTCCGAGTTCCCCTTCAAGTGCGATGGGTGCAAAGAAGCCG GTATCGGATCAAGGTTCAAATGCACGACGTGCGATTTCGATCTCCACCAACATTGCGCCATCCCTACTCAATCGGTCCACCATCCTTTCTACACCAAATG TTCCTTCCAATTCATGTCGCGCCCACCAGGCGACATCCCACGGTATTGTAATGCTTGTGAGCGCGATGTGAAAGGGTTCGTGTACCACTGCAGAGACTGC GGGTTCGATCTCCACCCGTGTTGCGCAAAGCTCCCCGTCGTGATTCACGACGGGGAGGTGAAGTTGTACTTGTACAGAAAGGTCAGTGCGTCGTGCCACA AGTGCGGGAGGAAAGGGAGGAGTTGGAGTTATCGGTCCACGTGCAAAAAGTACAATTTGCACGTGGCATGTGTGAAGGACATGTTGGTAGAGAATTGGCC TGAATTATGCTCCAATGCTCATAATAACTATTATTTCAAAAACAATAATAACAATAGTTACACCACGATTAAGAGTGTCAACAGTAAGGGTATTTACGGT AGTTTCAACGACGGTGGCAGCGGAGGAGGAGGAAGAAGGTTCGAGACGAGGATACCGAACTTGAAGAACACGGTGAATGTTCAACACAAGAGTAGAGGGA AAGTGAAGAGGTGTTGTGAGGTGGCGGGTTTGGCCGTGCAGTTCATTGTGGCTGCCGTGCTTGGGGATCCAACGGCTCTCATTGCCGGCGTTGTTGGGGG TTTGATATCCAAGGGTTGA
AA sequence Show only first row Show all	>Lus10017477 pacid=23163102 polypeptide=Lus10017477 locus=Lus10017477.g ID=Lus10017477.BGIv1.0 annot-version=v1.0 MKYSEISHFSHPQHKLRYEFSEFPFKCDGCKEAGIGSRFKCTTCDFDLHQHCAIPTQSVHHPFYTKCSFQFMSRPPGDIPRYCNACERDVKGFVYHCRDC GFDLHPCCAKLPVVIHDGEVKLYLYRKVSASCHKCGRKGRSWSYRSTCKKYNLHVACVKDMLVENWPELCSNAHNNYYFKNNNNNSYTTIKSVNSKGIYG SFNDGGSGGGGRRFETRIPNLKNTVNVQHKSRGKVKRCCEVAGLAVQFIVAAVLGDPTALIAGVVGGLISKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16050			Cysteine/Histidine-rich C1 dom...		Lus10017477 [exp]	0	1
					Lus10030151 [exp]	3.3	0.8707
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	3.5	0.8539
AT5G13740		ZIF1	zinc induced facilitator 1 (.1...		Lus10035765 [exp]	7.5	0.7897
					Lus10035928 [exp]	7.7	0.8099
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	7.9	0.8241
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	10.6	0.8431
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	11.3	0.8699
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	11.3	0.8055
AT5G59050			unknown protein		Lus10001433 [exp]	13.0	0.8106
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	16.6	0.8176

Compare expression of checked genes

Lus10017477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.