Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39110 1049 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 1045 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 835 / 0 Protein kinase superfamily protein (.1) AT5G54380 721 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G59700 654 / 0 Protein kinase superfamily protein (.1) AT3G46290 650 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G24010 622 / 0 Protein kinase superfamily protein (.1) AT3G51550 592 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 564 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G04690 557 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028805 [exp] 1510 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10000562 [exp] 761 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10021632 [exp] 761 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 724 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 670 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 669 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10027509 [exp] 606 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10039274 [exp] 603 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10014185 [exp] 580 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120400 [exp] 1071 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 1059 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.015G061700 [exp] 842 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.001G405500 [exp] 756 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 747 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 708 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 691 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.016G138700 [exp] 609 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 583 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 575 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017478 pacid=23163196 polypeptide=Lus10017478 locus=Lus10017478.g ID=Lus10017478.BGIv1.0 annot-version=v1.0 ATGGCGATGGAAAGAACACGAAAAAAACCAGGGAACCCTCCACCTCCATCACCACCTCCGTTACCAAATTCAACCTCAACCCATTTCAATTCGTTCATCA ATCGAATGTCAGCTGATTTCCCCCTTGTGCTGCTCATCCTCCTCTTCTTCCTCTCCTCCGCCGCCGTCCATGCGGCGCCGTTCAAGCCGGAAGACCATTT CCTAATCGCCTGCGGATCCAAGTCCAAGCTCCAGCTCCCCGACGGCCGGACATTCATGAGCGACGATGAATCCCACCAGTTTCTAAAATCCGATGAGAAG AATTCAACCTCTGCCCCGTCGTCGGCCAACGTTCCTCTGCCGATTTATTTAAACTCCAGAGTTTTTTTCAAAGAGGCTGTCTACAATTTCAATCTTAAAG CCCCCGGGTGGCATTGGGTCCGGTTATACTTCTACCCGATGAAGAACGACCGGTTCGATCTGAAATCGGCTCGGTTCTCTGTCACGACCGATAAGTACGT GCTCCTCCACGGGTTCAACCCGAATAACGAAATCGCGGTTTCGAGGGAGTATCTTGTTAACCTGGATGAGGAAGTTTTCTCGATTCATTTCAAGCCCGGT GAAGATTCGATGGCGTTTGTTAATGGGATTGAATTGGTTTCCGCTCCCGATGAGTTGATCGGCGACCAAGCCACTGGTCTTTTCCCCGTGAGTGGGTTTC CTGGGTTGGGCAAGTATGCTTATAACACTGTTTACAGATTGAACATGGGCGGGCAAGTGCTAACTCCAAGGAACGACACCTTAGGAAGGACATGGGAGAA CGACCGCCGCTACCTAAAGGCCGACGTCCTCGCTTCAAACGTCTCGATCCCCACGTCGGCGGTCAAGTACGGCAGCAACATTTCCCCCCTCATCGCTCCA GCGCCGGTGTACGCCTCCGGCGAGAAAATGGCAGATTCACAAACAATCCAAGCCAATTTCAACATCACCTGGAACTTCGAAGCCGACGCCGCCTTCAATT ACTTGATCCGCCTCCACTTCTGCGACATCATAAGCAAATCCCTGAATTCCCTCTACTTCAACGTCTACATCAACGGCAGAACCGCCCTCTCCACTCTAGA TCTCTCCGCCCTCACCGGCCAATTAGCGTCGCCGTATTTCAAAGACATAGTGGTCAGTTCGGCTCTGATAACTAAAGGAATAATCGTTGAGATCGGCCCG ACCCACATGGATACAGGTTCGAAAGACGCGATCTTGAACGGGTTGGAGATCATGAGGATGAGTAATTCGGTCGATAGCTTGGACGGCGAGTTCGGAATCG ACGGCCGGCAAGCTATGGCGACGAAGAAGACGGTGGCGGCGGTAGGGTTTGCGATGATGTTTGGAGCTTTTGTTGGACTTGGTGCTATGGTAATTAAGTG GCATAAGAGGCCTCAAGATTGGCAGAGGAGGAATAGCTTCTCTTCTTGGTTGCTTCCTCTCCACGCAAGCGATACTAGCTTCATGTCGAAAGGGTCGGGG AAGTCGAATTTCAACTCCTCGACTTTCGGGCTGGGGCGGTTCTTCACGTTCGCGGAGTTACAGGAGGCCACAAAGGGGTTCGATTCGAGCTCGATTATCG GAGTTGGAGGGTTCGGAAATGTGTACATTGGAGTGATCGATGAAGGAGCCACTAAAGTTGCTGTGAAAAGAGGGAATCCACAATCCGAGCAAGGAATCAA CGAGTTTCAGACCGAAATTCAGATGCTTTCCAAGCTTAGACACAGGCATTTGGTGTCGTTGATCGGATACTGCGACGAGAACGATGAGATGATCTTGGTT TACGAATTCATGTCTCAAGGGCCGTTTCGAGACCATTTGTATGGGAAGAACTTGCCACCATTGTCATGGAAGCAGAGATTGGAGATAAGCATAGGAGCAG CTAGAGGGCTGCATTACCTTCACACCGGGACAGCACAAGGGATCATCCATAGGGATGTAAAGACGACGAATATCCTTCTAGACGATGCGTTTGTGGCTAA AGTGGCGGACTTTGGCCTGTCGAAAGATGGGCAGATGGGGCAGAACTATGTGAGCACTGCTGTGAAGGGGAGCTTTGGGTACTTGGATCCTGAGTACTTC AGGAGGCAACAGCTGACTGATAAATCGGATGTTTACTCGTTCGGAGTAGTGTTGTTGGAAGTGTTGTGTGCTAGGCCGGCTATAAATCCTGCATTGCCGA GGGAGCAAGTGAACTTGGGGGAATGGGCAATGCAGTGGAAGAGGAAAGGATTGCTGGAGAAGATCATTGACCCTCACCTAGCTGGGACTATATGTCCTGA ATCGTTGACCAAGTTCGCTGAGGCTGCTGAGAAGTGCTTGGCGGATTACGGTGTCGATAGGCCTAGCATGGGGGATGTGCTGTGGAATTTGGAGTCTGCT TTGCAGCTTCAGGAGATCTTCATGCAAGGAGGGAAAAAAGATGGTGATAGTGATGATGATGATAGTAAGGAATCATCTCCAAGTTCAGCATCACCTGGTA TGCCTGCTGTTGTTGCTACTACTACTGCTACTGCTGCTCCTCCTCCTCCGGTTCCTTCGACCACCACCGATGATCGTCCTGTCGAGAATCAGAATCGAGG GGTGCAGACCGGTGGTACTGGTACCATTAGTGAACACTCTGGTACTGCCATGTTTGCACAGTTCTCTGACCTTAGTGGAAGGTAA
AA sequence Show only first row Show all	>Lus10017478 pacid=23163196 polypeptide=Lus10017478 locus=Lus10017478.g ID=Lus10017478.BGIv1.0 annot-version=v1.0 MAMERTRKKPGNPPPPSPPPLPNSTSTHFNSFINRMSADFPLVLLILLFFLSSAAVHAAPFKPEDHFLIACGSKSKLQLPDGRTFMSDDESHQFLKSDEK NSTSAPSSANVPLPIYLNSRVFFKEAVYNFNLKAPGWHWVRLYFYPMKNDRFDLKSARFSVTTDKYVLLHGFNPNNEIAVSREYLVNLDEEVFSIHFKPG EDSMAFVNGIELVSAPDELIGDQATGLFPVSGFPGLGKYAYNTVYRLNMGGQVLTPRNDTLGRTWENDRRYLKADVLASNVSIPTSAVKYGSNISPLIAP APVYASGEKMADSQTIQANFNITWNFEADAAFNYLIRLHFCDIISKSLNSLYFNVYINGRTALSTLDLSALTGQLASPYFKDIVVSSALITKGIIVEIGP THMDTGSKDAILNGLEIMRMSNSVDSLDGEFGIDGRQAMATKKTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQRRNSFSSWLLPLHASDTSFMSKGSG KSNFNSSTFGLGRFFTFAELQEATKGFDSSSIIGVGGFGNVYIGVIDEGATKVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILV YEFMSQGPFRDHLYGKNLPPLSWKQRLEISIGAARGLHYLHTGTAQGIIHRDVKTTNILLDDAFVAKVADFGLSKDGQMGQNYVSTAVKGSFGYLDPEYF RRQQLTDKSDVYSFGVVLLEVLCARPAINPALPREQVNLGEWAMQWKRKGLLEKIIDPHLAGTICPESLTKFAEAAEKCLADYGVDRPSMGDVLWNLESA LQLQEIFMQGGKKDGDSDDDDSKESSPSSASPGMPAVVATTTATAAPPPPVPSTTTDDRPVENQNRGVQTGGTGTISEHSGTAMFAQFSDLSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39110			Malectin/receptor-like protein...		Lus10017478 [exp]	0	1
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	5.8	0.8884
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	7.5	0.8846
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	7.6	0.8963
AT2G33855			unknown protein		Lus10015404 [exp]	8.1	0.8857
AT2G33855			unknown protein		Lus10013983 [exp]	15.3	0.8833
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	16.4	0.8805
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	17.7	0.8697
AT4G38100			unknown protein		Lus10002647 [exp]	19.4	0.8581
					Lus10015565 [exp]	20.1	0.8714
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	21.2	0.8703

Compare expression of checked genes

Lus10017478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.