Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21470 894 / 0 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 149 / 6e-39 ECR1 E1 C-terminal related 1 (.1) AT5G06460 125 / 1e-29 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 119 / 9e-28 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 88 / 3e-18 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 74 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G32410 63 / 2e-10 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 57 / 2e-08 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G50580 55 / 8e-08 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G50680 55 / 8e-08 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028804 [exp] 1234 / 0 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 151 / 1e-39 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 151 / 1e-39 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10012507 [exp] 132 / 1e-31 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 124 / 3e-29 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 124 / 4e-29 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10000697 [exp] 93 / 1e-19 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 92 / 2e-19 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10031562 [exp] 64 / 3e-10 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120200 [exp] 974 / 0 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 962 / 0 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.008G204000 [exp] 155 / 4e-41 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 155 / 6e-41 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.009G075700 [exp] 133 / 4e-32 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 130 / 3e-31 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 130 / 6e-31 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 96 / 1e-20 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 71 / 1e-12 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G229100 [exp] 61 / 1e-09 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0063 [flax] [poplar] PF10585 [flax] [poplar] UBA_e1_thiolCys Ubiquitin-activating enzyme active site
Representative CDS sequence Show only first row Show all	>Lus10017479 pacid=23163174 polypeptide=Lus10017479 locus=Lus10017479.g ID=Lus10017479.BGIv1.0 annot-version=v1.0 ATGGCGTCCCTACAACAGTCGCCCGCCATAAAGGGCGCCAAAGTGCTGATGGTTGGAGCTGGTGGTATTGGCTGCGAGCTTCTCAAGACCCTCGCCCTCT CCGGATTTGAAGATATTCATATTATCGATATGGATACTATAGAAGTTAGCAACCTCAATAGACAGTTTTTGTTTCGACAGTCACATGTTGGGCAGTCTAA GGCCAAGGTTGCTAGAGATGCTGTACTGAGGTTTAGGCCTCATATAAGCATCACTTCCTATCATGCAAATGTGAAAGATACTGACTTCAATTTGGACTTC TTCAAGCAATTCGATGTTGTTTTGAATGGACTTGACAATGTGGATGCAAGGCGGCATGTGAATCGCCTGTGCTTGGCCGCTGAAGTTCCTTTAGTGGAGA GTGGGACTACTGGCTTCCTAGGACAGGTTTCAGTACATGTGAAAGGAAGAACCGATTGCTATGAATGTAACCCCAAACCCGCTCCTAAGACATATCCAGT TTGCACAATTACTAGTACTCCTTCAAAGTTTGTTCACTGTATTGTTTGGGCAAAGGAGCTTCTTTTTGCGAAGTTGTTTGGTGACAAAAATCAGGACAAT GATTTAAATGTTCACTCTGGTGATGCTGCTGGCTCTTCAGAACAAGCTGATGACGTGTTTGAACGCAAAGCTGATGAAAGCATTGAAAAATATGGGAAGA GAATATATGATCATGTATTTGGTTATAATATCGAACGGGCTTTATCTAATGAAGAGACATGGAAAAATCGACACAAGCCTAAACCCATATATGTCAGGGA CGTTATATCTGCTGAGCTGATGCAGACAAATGGAAGTTCTGATAAAGGGGGCCCAGGTGATGATCCTTTGTCAGTTTCTGCCATGGCATCATTAGGCCTG AAGAATCCACAGGAATTGTGGAGCCTCGACGAAAATTCAAGAGTTTTTCTTGAAGCTTTGAATCTGTTCTTTGATAAAAGAGAAAAGGAGATCGGAAACC TTAGTTTCGACAAAGATGATCCACTTGCTGTTGAATTTGTTACTGCTGCTGCAAATATCCGTGCTGCCTCGTTTGGCATCACTTTGCATAGCCTTTTTGA AGCAAAAGGTATTGCTGGTAATATCGTGCATGCAGTTGCGACAACAAATGCGATCGTAGCTGGTTTAATTGTTATTGAAGCAATCAAGGTGTTGCAGGAA GATGTTGACCAGTACAGGACGTCATACTGTCTTGAACACAAGACCAAAAAAATGCTTATAATGCCGGTTGAACCCTTTGAGCCAAACAAGAACTGCTGTG TCTGTTCCGAGACACCGCTAACATTGGAGGTCAACACTAATCGTTCGAAGCTACGGGACTTTGTGGATAAGATAGTTAAAGCCAAGCTTAGCATGACCTC GCCATTGATTATGCATGGGTCTGCACTTCTATACGAAGTTGGTGATGACCTCGACAAAGACATGGTTGCTAACTACTCTGCTAACCTTGAAAAGGTGCTA TCTAGTCTACCATCTCCGGTTACTGGTGGGACAATGCTTACGGTGGAGGATCTGTTACAGGAGTTTACTTGCAGTATCAACATAAAACATAGGGAGGACT TTGATGAGGAGAATGAACCGGACGGAATGGTTCTCCATGGATGGACTCAAGCTCCCCCTTCAAAATCTACCGACGACAGCAAGAAGACCCTGGTTGGGAA TGGAGACAGTACATCAGAAACCAAACCCGCAGAGGCCGAAGCTGATGCCGGAGTCAAACTCGATTCTGAGGAGATTGAGGTTGCAGGGAAGAAGAGAAAA GCACCAGATACCGAGGAAATCACTCTCGTTGTACCCGCAACTATTGTCTACGACGAAGGTGCGAATCACAGCAAAGTTCACAAGATCGATGATGAAAATG AAAATGATGATGACCTTGTCATGCTCGATCATTGGGATGTAGACACAAGTAAGAAGCAGAAATTGCGATAG
AA sequence Show only first row Show all	>Lus10017479 pacid=23163174 polypeptide=Lus10017479 locus=Lus10017479.g ID=Lus10017479.BGIv1.0 annot-version=v1.0 MASLQQSPAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPHISITSYHANVKDTDFNLDF FKQFDVVLNGLDNVDARRHVNRLCLAAEVPLVESGTTGFLGQVSVHVKGRTDCYECNPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLFGDKNQDN DLNVHSGDAAGSSEQADDVFERKADESIEKYGKRIYDHVFGYNIERALSNEETWKNRHKPKPIYVRDVISAELMQTNGSSDKGGPGDDPLSVSAMASLGL KNPQELWSLDENSRVFLEALNLFFDKREKEIGNLSFDKDDPLAVEFVTAAANIRAASFGITLHSLFEAKGIAGNIVHAVATTNAIVAGLIVIEAIKVLQE DVDQYRTSYCLEHKTKKMLIMPVEPFEPNKNCCVCSETPLTLEVNTNRSKLRDFVDKIVKAKLSMTSPLIMHGSALLYEVGDDLDKDMVANYSANLEKVL SSLPSPVTGGTMLTVEDLLQEFTCSINIKHREDFDEENEPDGMVLHGWTQAPPSKSTDDSKKTLVGNGDSTSETKPAEAEADAGVKLDSEEIEVAGKKRK APDTEEITLVVPATIVYDEGANHSKVHKIDDENENDDDLVMLDHWDVDTSKKQKLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	1.4	0.8152
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	4.5	0.7554
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	9.5	0.7943
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	11.2	0.7684
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	11.2	0.7776
AT1G55915			zinc ion binding (.1)		Lus10016607 [exp]	12.2	0.6966
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	16.7	0.7264
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	20.0	0.7637
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	23.2	0.7721
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	24.1	0.7042

Compare expression of checked genes

Lus10017479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.