Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 639 / 0 Major facilitator superfamily protein (.1) AT4G34950 308 / 6e-98 Major facilitator superfamily protein (.1) AT5G14120 293 / 1e-91 Major facilitator superfamily protein (.1) AT3G01930 292 / 2e-91 Major facilitator superfamily protein (.1.2) AT2G16660 290 / 6e-91 Major facilitator superfamily protein (.1) AT5G50520 269 / 4e-83 Major facilitator superfamily protein (.1) AT5G50630 269 / 4e-83 Major facilitator superfamily protein (.1) AT2G28120 232 / 1e-68 Major facilitator superfamily protein (.1) AT2G39210 218 / 4e-63 Major facilitator superfamily protein (.1) AT1G74780 199 / 6e-57 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028803 [exp] 998 / 0 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 846 / 0 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 845 / 0 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 608 / 0 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 318 / 7e-102 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 312 / 2e-99 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 298 / 1e-93 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 297 / 2e-93 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 292 / 2e-91 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012300 [exp] 749 / 0 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 724 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 671 / 0 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 325 / 2e-104 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 318 / 2e-101 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 312 / 3e-99 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 298 / 5e-94 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 284 / 2e-88 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 283 / 1e-87 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G006400 [exp] 213 / 2e-61 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10017480 pacid=23163109 polypeptide=Lus10017480 locus=Lus10017480.g ID=Lus10017480.BGIv1.0 annot-version=v1.0 ATGCCGCCGAACATAATCGTGAAAGGAGGGAGCAGGCCGCCATGGGTGGGGCTAGCAGCGGCGGTGTGGGTGCTAGTAGCTGCAGGGAACGGCTACACTT TCCCTCTCTACTCCCCGGCGCTGAAATCAGTGATGGGTCTTAGCCAGCAGCAGGTCACAATACTGGGTGTCGCCAATGATATCGGGGAGAGCGTTGGATT GCTCCCTGGCATCGCCTGTAACAAGTTCCCTCCATGGGCTGTTCTCTCCGTCGGCGCCGTCATGTGTTTTTTGGGGTACGGCGTGTTGTGGCTTACCGTC AGTCAGATCGTCTCCGGTTTGCCTTACTGGCTGTTATGGATCGCGCTTGTTATCGCCACAAACAGCAACGCATGGTTTGGCACACCGGTGATCGTAACCA ACATGAGGAACTTCCCCCTCAGCAGGGGCACAGTATCCGGAATACTCAAAGGCTACGTTGGAGTCTCAGCTGCAGTTTACACAGTAATATACAGCATGGT CCTCAAGGATAATTCCACTAATTTTCTCTTGTTCCTCACCATCGGCATCCCCATTATATGCTTTATGATGATGTATTTCATCCGGGCGTGCACTCCAGCT TCCGGAGAAGACTCATCGGTTCACATCCATTTCGTCTTCACTCAGGCCGCAAGTGTTCTTCTCGCCATTTACCTTCTCACTACCACGATAATAACCGATG TGTTTCCCGTCAGCAATGCTGTTTGCTATACTCTGGTTTCTATAATGGTGGCTCTTTTGATCGCCCCTCTTGTGATTCCTGTTAAAATGACTCTATTCCC CGTTACTTCTTCCAAGAAACGTAGGCCCCCGCCAGTTGAAGGTGTTGAATCAACATCAACAGAGCCTTTGTTATTGCAACAATCGTCCTCGGCTTATCTT GGGAGCTTCATCGAGAACGAAGATACTTCCGATGTTCAAACACTTCTTGCTGTTGGGGAGGGAGCCGTGAAGAAGAAGAGAAAGCCAAAGAGAGGTGAAG ACTTCAACTTCCGTGAGGCCCTAGTGAAAGCGGATTTCTGGCTTCTTTGGGTTGTGTACTTTCTCGGAACCGGTGCAGGAGTTACTTTCCTCAACAACTT GGCTCAAATTGGAGTCTCGTTTGGGCTTAACGACACGACAATCTTGCTTGCTCTCTTTAGCTTCTGCAACTTCGTTGGCCGCCTTGGATCTGGCGTTGTT TCCGAGTATTTTGTCAAGTCAAGTACTACGACACCGAGGACCATGTGGATCACAGTAGCACAAGCAATCATGGTTTTGGTCTTTATTCTGTTTGGTTTGG CTGTTGATGGCATACTCTATGTAGCAACTGCTCTACTCGGTGTCTGCTACGGGATTCTCTATTCGGTGGTGGTTCCGACTACCTCCGAGCTCTTTGGATT GGAGCATTTCGGTATTATTTACAACTTCTTGCAACTGGGGAACCCTCTTGGTGCGCTTCTCTTCTCAGGAGGACTTGCAGGGACCATGTATGATATAGAA GCCTCTAAGCAAGGAAGCTCCACCTGCATCGGTCACGACTGCTTTAAATTGACGTTCTTCGTTCTGGCGGGCATATGTGGACTTGGAACTCTTTTAAGCG TAATCTTGACGATTAGAATAAAGCCGGTTTACCAAATGCTTTATTCTGGAGGATCCTTCCGAGTGATGCAGACTACTTCAGACCATTGA
AA sequence Show only first row Show all	>Lus10017480 pacid=23163109 polypeptide=Lus10017480 locus=Lus10017480.g ID=Lus10017480.BGIv1.0 annot-version=v1.0 MPPNIIVKGGSRPPWVGLAAAVWVLVAAGNGYTFPLYSPALKSVMGLSQQQVTILGVANDIGESVGLLPGIACNKFPPWAVLSVGAVMCFLGYGVLWLTV SQIVSGLPYWLLWIALVIATNSNAWFGTPVIVTNMRNFPLSRGTVSGILKGYVGVSAAVYTVIYSMVLKDNSTNFLLFLTIGIPIICFMMMYFIRACTPA SGEDSSVHIHFVFTQAASVLLAIYLLTTTIITDVFPVSNAVCYTLVSIMVALLIAPLVIPVKMTLFPVTSSKKRRPPPVEGVESTSTEPLLLQQSSSAYL GSFIENEDTSDVQTLLAVGEGAVKKKRKPKRGEDFNFREALVKADFWLLWVVYFLGTGAGVTFLNNLAQIGVSFGLNDTTILLALFSFCNFVGRLGSGVV SEYFVKSSTTTPRTMWITVAQAIMVLVFILFGLAVDGILYVATALLGVCYGILYSVVVPTTSELFGLEHFGIIYNFLQLGNPLGALLFSGGLAGTMYDIE ASKQGSSTCIGHDCFKLTFFVLAGICGLGTLLSVILTIRIKPVYQMLYSGGSFRVMQTTSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	2.2	0.9726
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	3.5	0.9798
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	4.5	0.9698
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	4.5	0.9789
AT3G51930			Transducin/WD40 repeat-like su...		Lus10024180 [exp]	5.4	0.9579
AT3G19990			unknown protein		Lus10028680 [exp]	7.1	0.9749
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037322 [exp]	9.0	0.9587
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	9.2	0.9737
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	9.8	0.9726
					Lus10005393 [exp]	9.8	0.9710

Compare expression of checked genes

Lus10017480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.