Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39100 325 / 6e-114 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G22140 300 / 2e-104 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 202 / 3e-66 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 54 / 2e-08 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 53 / 6e-08 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT4G23120 51 / 2e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 45 / 1e-05 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G11560 45 / 2e-05 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G02470 43 / 6e-05 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 42 / 0.0001 Alfin AL7 alfin-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028801 [exp] 439 / 4e-159 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 338 / 2e-119 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 289 / 1e-99 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 286 / 2e-98 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 265 / 3e-87 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10033410 [exp] 45 / 3e-05 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 44 / 8e-05 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10027805 [exp] 43 / 8e-05 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10008527 [exp] 43 / 0.0001 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159900 [exp] 387 / 6e-139 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G121000 [exp] 379 / 2e-135 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 304 / 1e-105 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 302 / 5e-105 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 301 / 9e-105 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 300 / 3e-104 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 295 / 3e-102 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G127400 [exp] 47 / 6e-06 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G104300 [exp] 46 / 1e-05 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 45 / 3e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10017482 pacid=23163206 polypeptide=Lus10017482 locus=Lus10017482.g ID=Lus10017482.BGIv1.0 annot-version=v1.0 ATGACAAAGCCAAAAGCTCCTCGCCGAACTATGGACTCCTACTCTGTCAAGCACATCAACAACAAAACCATCAAACCCGGCGAATGCGTGCTAATGCGAG CTTCCGAGCCGTCGAAGCCGTCCTACGTGGCGAAGATCGAGCAGATCGAGTCCGACAGCCGAGGCGCGAACGTGAAGCTGCAGGTGAGGTGGTATTACCG GCCGGAGGAATCGATCGGAGGCCGCCGGCAGTTTCATGGCTCGAAAGAAGTGTTCCTGTCCGATCACTACGATTTCCAGCGCGCGGATACGATCGAAGGG AAGTGTACGGTCCACAGTTTCAAGAGTTACTCGAAGCTCGACGCTGTCGGGAACGAGGATTTCTTCTGCCGGTTCGAGTATAACTCCACCACCGGAGCTT TCAATCCAGACAGAGTCCCCGTGTATTGTAAATGTGAGATGCCTTATAACCCTGATGACCTAATGGTGCAGTGTGAAGGATGCAGCGACTGGTTTCACCC TGCTTGTATAGAAATGACAGTAGAGGAAGCGAAAAGACTCGACCACTTCTTCTGTGAGAATTGCTCGTCCCAAGTCCAAAAGAAGTTGGAGGATTCACAT GATACTACCACCAGAGCGAGACAGTCGGATACTAAGGTCGAAACAAAGAGGCGTCGAAGGGGATAA
AA sequence Show only first row Show all	>Lus10017482 pacid=23163206 polypeptide=Lus10017482 locus=Lus10017482.g ID=Lus10017482.BGIv1.0 annot-version=v1.0 MTKPKAPRRTMDSYSVKHINNKTIKPGECVLMRASEPSKPSYVAKIEQIESDSRGANVKLQVRWYYRPEESIGGRRQFHGSKEVFLSDHYDFQRADTIEG KCTVHSFKSYSKLDAVGNEDFFCRFEYNSTTGAFNPDRVPVYCKCEMPYNPDDLMVQCEGCSDWFHPACIEMTVEEAKRLDHFFCENCSSQVQKKLEDSH DTTTRARQSDTKVETKRRRRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	0	1
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	1.0	0.8369
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	1.4	0.8134
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	4.8	0.7794
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	7.4	0.8113
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	12.0	0.7882
AT3G15630			unknown protein		Lus10017768 [exp]	12.4	0.7728
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	13.2	0.8069
AT1G74160			unknown protein		Lus10017857 [exp]	13.6	0.8073
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	14.3	0.7691
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	16.2	0.8116

Compare expression of checked genes

Lus10017482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.