Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16405 634 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 71 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 70 / 3e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 69 / 7e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 67 / 1e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 68 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 63 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 61 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 60 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G32551 56 / 9e-08 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028800 [exp] 815 / 0 AT2G16405 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 77 / 2e-14 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 74 / 6e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 73 / 9e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003206 [exp] 73 / 3e-13 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 72 / 9e-13 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 67 / 3e-11 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 66 / 3e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 65 / 1e-10 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160000 [exp] 669 / 0 AT2G16405 730 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G121100 [exp] 457 / 4e-155 AT2G16405 517 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 78 / 1e-14 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 74 / 3e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G018200 [exp] 76 / 6e-14 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 71 / 3e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 72 / 1e-12 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 68 / 2e-11 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G086600 [exp] 68 / 2e-11 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G403400 [exp] 67 / 3e-11 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017483 pacid=23163165 polypeptide=Lus10017483 locus=Lus10017483.g ID=Lus10017483.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCGTCGGCGGCGACCGAGAATCAAAATCCCGGTGAAAGCAACGGAGTCGAGCGTAACACGGAGGAGCGAGTGGATGAGGAAGCTAAGAAGA AGACTGTAGATCCGGAGTTCTTCTGCTGCTTGCTTCAGCCTTCTAATGCTGATTCGGATCCTGATTATGTAGGCACGCGGCGGCTCCTCCTCTATCGCAA AGCGGAGTCCGGTTCAGTCCGACGATTTGATTGGAGATGCAGTGGAAAGGGCTATGTCAGTTACCGTAACTACATACGAAGGCCGAGAAATTGGGAGAAG TCGCAAGTTTCAAGCCTCCGAAGCACGCCAGGAAACAGTGGTCGATGGTTTCCTTCGGCAAGTCCACTCGCCCAATTATATGACGTCGAAAGTTTTACTT CTAGCCGGGATGTACCTAGTATTAATCCATCTTCAACTCGTAGGACAAGTGTCAGCTCAGGCGGAAGTGATATTGATCACCCACGTGAGAGACGACCTGA ACCAGCCTATTCTTTTGTTGGAATGCATTGCATCTTTGATCAGAGCAAAGCTGCTGTGACAGTTCTGAAGTTTGGTAAAAGGAGTTCTGATCTACTGGCA TATGGGGCATCAGATGGTACATTGACGGTCTGTACAGTCTCCCAGCCACCTTCAGTCCTCAAACAACTTAATGGACACTCTAAAGATGTCACAGACTTTG ACTTCGCCTCCAACAATCAGTACATCCCCTCCAAAAATCAGTACATTGCATCGTCATCAATGGATAAAACTGTGAGAGTGTGGGAGTTATCAAAAGGAAC TTGCATTCGAGTCATTTATGGAGTTTCTCCACAACTATGCATCCGTTTTCACCCTGTAAATAACAACTTCCTATCCGCTGGAAATGTAAACAGAGAAATC AGCGTATTCAACTTCAGCACAGGCAGGACTATTGCCAAAACACTTCTCGGCAATGCGATAACCTCGATGGACCATGATCATACTGGTCAGCTCATCTTCT GTGGAGACGGACAGGGATGTATATACTCCATGAGCATGGACTCCCGTACAGGTGCCTTATCACGCTCTCATCGTTATCGGAGTAGCGGCAAGACCAAATC CCCAGTAACGACTGTCCAGTACCGAAGCTTCTCTCTGCTGGCACGTGGACCCGTGTTGCTCACGTGCACTCAGGATGGGAATTTATCCTTGTTCAGTGTG GCTCTGGAAATCAAAGGCTATCTAACTCTTTACTGCTCGCTGAAGTTGGCGCGACGAGTACACAGCATGCGAGCCTCGTTCTGCCCTCTTCTCTCCCTCG AGAAAGGAGAATACATAGTTGCTGGAAGTGAGGATTCAAATGTCGATTTCTACGATCTGACAAAGCCAAAGAATCCTTGCGTCAACAAACTACAGGTATT CAACTTCAGCACAGGCAGGACTATTGCCAAAACACTTCTCGGCAATGCGATAACCTCGATGGACCATGATCATACTGGTCAGCTCATCTTCTGTGGAGAC GGACAGGGATGTATATACTCCATGAGCATGGACTCCCGTACAGGTGCCTTATCACGCTCTCATCGTTATCGGAGTAGCAGCAAGACCAAATCCCCAGTAA CGACTGTCCAGTACCGAAGCTTCTCTCTGCTGGCACGTGGACCCGTGTTGCTCACGTGCACTCAGGATGGGAATTTATCCTTGTTCAGTGTGGCTCTGGA AATCAAAGGCTATCTAACTCTTTACTGCTCGCTGAAGTTGGCGCGACGAGTACACAGCATGCGAGCCTCGTTCTGCCCTCTTCTCTCCCTCGAGAAAGGA GAATACATAGTTGCTGGAAGTGAGGATTCAAATGTCGATTTCTACGATCTGACAAAGCCAAAGAATCCTTGCGTCAACAAACTACAGGGTCACCAGTTTC CGGTGATGGGTGTCACATGGAACTACGGCGAAAACTTGCTTGCATCCTCAGATGAACACGGTGTTGTTATCGTGTGGAAGAGGGCCAAGACAAGCTAA
AA sequence Show only first row Show all	>Lus10017483 pacid=23163165 polypeptide=Lus10017483 locus=Lus10017483.g ID=Lus10017483.BGIv1.0 annot-version=v1.0 MAESSAATENQNPGESNGVERNTEERVDEEAKKKTVDPEFFCCLLQPSNADSDPDYVGTRRLLLYRKAESGSVRRFDWRCSGKGYVSYRNYIRRPRNWEK SQVSSLRSTPGNSGRWFPSASPLAQLYDVESFTSSRDVPSINPSSTRRTSVSSGGSDIDHPRERRPEPAYSFVGMHCIFDQSKAAVTVLKFGKRSSDLLA YGASDGTLTVCTVSQPPSVLKQLNGHSKDVTDFDFASNNQYIPSKNQYIASSSMDKTVRVWELSKGTCIRVIYGVSPQLCIRFHPVNNNFLSAGNVNREI SVFNFSTGRTIAKTLLGNAITSMDHDHTGQLIFCGDGQGCIYSMSMDSRTGALSRSHRYRSSGKTKSPVTTVQYRSFSLLARGPVLLTCTQDGNLSLFSV ALEIKGYLTLYCSLKLARRVHSMRASFCPLLSLEKGEYIVAGSEDSNVDFYDLTKPKNPCVNKLQVFNFSTGRTIAKTLLGNAITSMDHDHTGQLIFCGD GQGCIYSMSMDSRTGALSRSHRYRSSSKTKSPVTTVQYRSFSLLARGPVLLTCTQDGNLSLFSVALEIKGYLTLYCSLKLARRVHSMRASFCPLLSLEKG EYIVAGSEDSNVDFYDLTKPKNPCVNKLQGHQFPVMGVTWNYGENLLASSDEHGVVIVWKRAKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16405			Transducin/WD40 repeat-like su...		Lus10017483 [exp]	0	1
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	4.5	0.8896
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	5.9	0.9008
AT5G58510			unknown protein		Lus10031287 [exp]	5.9	0.8819
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	8.8	0.8985
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	11.0	0.8946
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	13.3	0.8746
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	15.3	0.8803
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	15.4	0.8801
AT3G17900			unknown protein		Lus10030797 [exp]	16.4	0.8564
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10019170 [exp]	18.5	0.8541

Compare expression of checked genes

Lus10017483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.