Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 749 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 667 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 610 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 603 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 541 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 528 / 0 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 526 / 0 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 401 / 8e-138 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 294 / 5e-95 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 285 / 1e-91 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028799 [exp] 954 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 817 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 784 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 746 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 660 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10024299 [exp] 591 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10039978 [exp] 535 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 535 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 514 / 1e-180 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121200 [exp] 773 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 769 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 719 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 704 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 551 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.006G063700 [exp] 541 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 530 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 296 / 4e-96 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 285 / 2e-91 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 276 / 8e-88 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10017484 pacid=23163139 polypeptide=Lus10017484 locus=Lus10017484.g ID=Lus10017484.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTGCTGGGTTCTTCATCTTGTTTCTGGGCTCTGGTTCTGCTTCTTAGCACAGCCGAAATCACCACCACCAATGGCGGCCTCACCAGCAGCT TCGTCAGGAAAGAGCAGAAGTCCGCCGACATGCCTCTCGACAGCGACGTCTTCAAACTTCCTCATGGCTACAATGCTCCTCAACAGGTTCATATAACGCA AGGAGACCATGATGGAAAGGCAATGATTGTGTCGTGGGTGACCATGGACGAACCCGGTTCGAGTCGAGTGGTTTACTGGAAGGAATCACACAGCAATAAG AAGAAGAAGCATACTGGGAAGTATAACAGTTACAAGTTCTATAACTATACTTCTGGCTACATTCATCACTGCACCATTCGGAATTTGGAGTATGACACGA AATATTACTACGAGGTTGGAACCGGTCACACGGCGAGAAGATTCCACTTCACAACTCCCCCTCCCGTCGGTCCTGATGTCCCTTACACATTTGGCATGAT GGGTGATCTTGGCCAGACTTTCGATTCCAACAGTACACTCACTCACTACGAGAACAACCCAAGCAAAGGACAGGCAGTGCTCTTCGTCGGGGACCTTTCT TATGCCGATAACTACCCGGATCACGACAACACGAGGTGGGACTCGTGGGCGAGGTTCGTCGAGAGGAGCGTAGCTTATCAGCCTTGGATTTGGACTCCCG GCAACCACGAGCTCGACTTCGCCCCTGAAATTGGTGAAAACAAGCCGTTTAAGCCGTTTACTAACCGGTACCATGTACCGTTTAAAGCGTCGGGAAGTAC TTCTCCACTTTGGTACTCGATCAAGAGAGCTTCTGCGTACATCATTGTCTTGTCTTCGTATTCTGCTTACGGTAAATACACTCCTCAGTACCAGTGGCTA GAGGCAGAGCTGCCGAAAGTGAATAGGACGGAGACGCCATGGCTGATCGTGATGGTGCATTCTCCGTGGTACAATAGCTACAACTATCATTATATGGAAG GAGAGACCATGAGGGTCATGTACGAATCGTGGCTCGTCAAGGCCAAAGTCGACTTTGTCCTCTCTGGTCATGTCCATGCCTACGAACGATCTGAACGTAT CTCGAATGTAGCTTACAACATCGTTAACGGACAATGCGCCCCAGTGAAGAACCAGGACGCTCCAGTTTACATCACCATAGGAGATGGAGGAAACATTGAA GGCTTAGCAAACAATATGACTTATCCACAGCCAGAGTACTCTGCATTCCGCGAAGCGAGCTTTGGACACGCCATTTTGGACATCAAGAACAGGACTCACG CTCGCTACAGCTGGCATAGGAACCAAGATGGTTATGCTGCGGAAGCTGATTCTATGTGGTTCTACAACAGATTCTGGCACCCTGTTGATGATTCTTCTAC TGGAAGCCAATCCTAA
AA sequence Show only first row Show all	>Lus10017484 pacid=23163139 polypeptide=Lus10017484 locus=Lus10017484.g ID=Lus10017484.BGIv1.0 annot-version=v1.0 MASLLGSSSCFWALVLLLSTAEITTTNGGLTSSFVRKEQKSADMPLDSDVFKLPHGYNAPQQVHITQGDHDGKAMIVSWVTMDEPGSSRVVYWKESHSNK KKKHTGKYNSYKFYNYTSGYIHHCTIRNLEYDTKYYYEVGTGHTARRFHFTTPPPVGPDVPYTFGMMGDLGQTFDSNSTLTHYENNPSKGQAVLFVGDLS YADNYPDHDNTRWDSWARFVERSVAYQPWIWTPGNHELDFAPEIGENKPFKPFTNRYHVPFKASGSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYQWL EAELPKVNRTETPWLIVMVHSPWYNSYNYHYMEGETMRVMYESWLVKAKVDFVLSGHVHAYERSERISNVAYNIVNGQCAPVKNQDAPVYITIGDGGNIE GLANNMTYPQPEYSAFREASFGHAILDIKNRTHARYSWHRNQDGYAAEADSMWFYNRFWHPVDDSSTGSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017484 [exp]	0	1
AT4G19460			UDP-Glycosyltransferase superf...		Lus10033297 [exp]	23.1	0.6158
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	49.0	0.5849
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	52.0	0.5659
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	62.9	0.5560
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10004544 [exp]	76.4	0.4973
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	77.9	0.4917
AT5G44310			Late embryogenesis abundant pr...		Lus10028304 [exp]	93.5	0.5407
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	127.4	0.5054
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	136.9	0.5039
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	191.6	0.4605

Compare expression of checked genes

Lus10017484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.