Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 658 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 582 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 545 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 536 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 504 / 5e-177 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 488 / 2e-171 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 478 / 4e-167 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 383 / 2e-130 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G52820 275 / 8e-88 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 275 / 9e-88 ATPAP18, PAP18 purple acid phosphatase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028799 [exp] 769 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 769 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 760 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 691 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 587 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10024299 [exp] 529 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10027710 [exp] 504 / 2e-176 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 502 / 2e-175 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 483 / 3e-168 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121200 [exp] 680 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 674 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 639 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 629 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 507 / 5e-178 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.006G063700 [exp] 501 / 1e-175 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 491 / 1e-171 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 290 / 1e-93 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 275 / 8e-88 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 259 / 2e-81 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10017485 pacid=23163146 polypeptide=Lus10017485 locus=Lus10017485.g ID=Lus10017485.BGIv1.0 annot-version=v1.0 ATGGGTTTTCTGGGTTCTTATTCTTTCTGCTCTGCTCTGATTTTGCTTCTCATCAGCACGGCCGTAAATGGCGGCCACACCAGCACCTTCGTCAGGAAAT TGCAGAGGTCCCTCGGCATGCCTCTCGATGGCGACGTCTTCCGCCCTCCACGCGGCTACAATGCTCCTCAACAGGTGCACATAACGCAAGGGGACCTTGA TGGTAAAGCAATGATAGTGTCGTGGGTGACCGTGGACCAACCCGGTTCAAGTCAAGTGGTGTACTGGAAGGAATCACAGAGCATGAAGAAGAAGATTAGT GTAGGGAAGTACAATACTTACAAGTACTCTAACTACACTTCTGGGTACATTCATCACTGCACCATCCGAAATTTAGAGTATGACACGAAATATCACTACG AAGTTGGGATCGGTCACACGGTGAGGAGATTCCACTTCATGAATCCCCCTCCAGTAGGTCCCGACGTCCCTTACACATTCGGCATCATTGGCGATCTTGG CCAGTCGTTTGATTCCAATGTTACACTCACTCACTACGAGAACAACCCGAAGAACCCACAAACGTTGCTCTACCTCGGGGACCTATCTTACGCCGATCAG TACCCGAAGAACGAACAAGCGATCAGATGGGACACATGGGGAAGGTTCGTCGAGAGAAGCGTAGCTTATCAGCCATGGGTTTGGATTGCCGGCAACCATG AGATTGAGTTCGACCCTAAAATTGGTGAAAAAGAGCCGTTTAAGCAGTACACAAACAGGTACCATGTACCATTTGAAGCGTCGGGAAGTACTTCACCGCT TTGGTACTCAATAAAGAGAGCTTCTGCGTACATAATTGTCCTGTCTTCATATTCCGGTTACGGCAAAGGCTCTCTTCAATGGTTCTGGCTAAGGGCAGAG TTGCCGAAAGTGAACCGGACCGAGACACCATGGTTGATCGTGATGGTGCATGCTCCCTGGTACAATAGCTACAACTACCATTACATGGAAGGAGAGTCCA TGAGGGTTGTGTATGAGTCGATGCTCATTGATGCCAAAGTCGATCTTGTCCTCGCTGGTCATGTCCATGCCTACGAACGATCTGAACGCATCTCGAATGT AGCTTACGACATCGTGAATGGACGATGCACCCCGGTGAAGAACCAGGATGCTCCAGTGTACATCACCGTTGGAGATGGAGGAAACACCGAAGGCTTAGCA AACAACATGACTTATCCACAGCCAGAGTACTCTGCATTCCGGGAGGCAAGCTTTGGCCACGCCATTTTGGAAGTCAAGAACAGGACTCACGCTCGCTACA GTTGGCATAGGAACCAAGACGGATATTCAACAGAAGCTGATTCTATGTGGTTCTATAACAGATTCTGGCACCCTGTTGATGATTCTTCTACCAGTGCCCA ATCCTAA
AA sequence Show only first row Show all	>Lus10017485 pacid=23163146 polypeptide=Lus10017485 locus=Lus10017485.g ID=Lus10017485.BGIv1.0 annot-version=v1.0 MGFLGSYSFCSALILLLISTAVNGGHTSTFVRKLQRSLGMPLDGDVFRPPRGYNAPQQVHITQGDLDGKAMIVSWVTVDQPGSSQVVYWKESQSMKKKIS VGKYNTYKYSNYTSGYIHHCTIRNLEYDTKYHYEVGIGHTVRRFHFMNPPPVGPDVPYTFGIIGDLGQSFDSNVTLTHYENNPKNPQTLLYLGDLSYADQ YPKNEQAIRWDTWGRFVERSVAYQPWVWIAGNHEIEFDPKIGEKEPFKQYTNRYHVPFEASGSTSPLWYSIKRASAYIIVLSSYSGYGKGSLQWFWLRAE LPKVNRTETPWLIVMVHAPWYNSYNYHYMEGESMRVVYESMLIDAKVDLVLAGHVHAYERSERISNVAYDIVNGRCTPVKNQDAPVYITVGDGGNTEGLA NNMTYPQPEYSAFREASFGHAILEVKNRTHARYSWHRNQDGYSTEADSMWFYNRFWHPVDDSSTSAQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	0	1
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	3.3	0.9407
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	4.5	0.9159
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	6.7	0.9198
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10041626 [exp]	9.2	0.8961
AT5G64120			Peroxidase superfamily protein...		Lus10007050 [exp]	11.7	0.9001
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	13.0	0.9311
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10025733 [exp]	13.3	0.8900
AT3G52105			unknown protein		Lus10019704 [exp]	15.4	0.8689
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	17.0	0.8832
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	17.3	0.8955

Compare expression of checked genes

Lus10017485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.