Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 121 / 1e-32 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT5G34850 99 / 2e-24 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G27190 94 / 2e-22 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 87 / 5e-20 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G18130 86 / 1e-19 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 80 / 8e-18 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT4G36350 79 / 3e-17 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G52940 72 / 6e-15 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT3G52780 40 / 0.0006 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028798 [exp] 218 / 2e-69 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 162 / 6e-48 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028799 [exp] 150 / 2e-43 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 149 / 9e-43 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 147 / 4e-42 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 110 / 2e-28 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10039978 [exp] 87 / 4e-20 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 86 / 2e-19 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 84 / 4e-19 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160100 [exp] 129 / 2e-35 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 127 / 1e-34 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 126 / 1e-34 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 125 / 7e-34 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 103 / 5e-26 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 99 / 3e-24 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 94 / 1e-22 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.003G030700 [exp] 43 / 5e-05 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017486 pacid=23163203 polypeptide=Lus10017486 locus=Lus10017486.g ID=Lus10017486.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTCTACTTTCTATTAGCTTTAGGATGGGCTCACAGCAGCACTGCCAATGGCGGCTACACCAGCAGCTTTGTCAGGAGAGACCAGAAGTCCG TCGACATGCCACTCCACAGCGACGTCTTCCAGCCTCCCTCCGGCTACAACGCTCGTCAGCAGGTTCGAAACTTGACACCAACTTTTGGAGACCATAACGG GAAGGCAATGATGGTCTCGTGGGCAACCGTGGACGAACCCGGTTCGAGTCAAATGGTTTATTGGAAGGAAGATAGTCCACAAGACAAGAAGGTTGCTGAA GGAAAACACGAGACTTACAAGTACCATAACTATAATTCTGGCAATATTCACCATTGCACCATCCGAAAGCTTGAGCACGAGGAATCCACAGCCAGAGTAC TCTGCCTACAGAGAAGCGAGCTTTGGGCGGACATAGAGAACAGGACTCATGCACACTATAGCTGGCATAGGAATCAGGATGGTGTTCCCATGGAGGCTGA TTCTTTGTGGCTCCGTAACAGATTCTGGAGCCCTAAATTGGATGATTCTACTAGCAATCAGTTCTAA
AA sequence Show only first row Show all	>Lus10017486 pacid=23163203 polypeptide=Lus10017486 locus=Lus10017486.g ID=Lus10017486.BGIv1.0 annot-version=v1.0 MSSLYFLLALGWAHSSTANGGYTSSFVRRDQKSVDMPLHSDVFQPPSGYNARQQVRNLTPTFGDHNGKAMMVSWATVDEPGSSQMVYWKEDSPQDKKVAE GKHETYKYHNYNSGNIHHCTIRKLEHEESTARVLCLQRSELWADIENRTHAHYSWHRNQDGVPMEADSLWLRNRFWSPKLDDSTSNQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017486 [exp]	0	1
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	6.4	0.9495
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	10.9	0.9369
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	12.8	0.9327
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	13.7	0.9212
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	17.0	0.9214
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10013632 [exp]	17.3	0.9268
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	21.2	0.9254
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	22.2	0.9330
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	23.5	0.9246
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	24.2	0.9234

Compare expression of checked genes

Lus10017486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.