Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39090 526 / 0 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT2G21430 510 / 0 Papain family cysteine protease (.1) AT4G16190 485 / 5e-173 Papain family cysteine protease (.1) AT3G54940 412 / 3e-144 Papain family cysteine protease (.2) AT5G60360 214 / 9e-67 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G19390 211 / 2e-64 Granulin repeat cysteine protease family protein (.1) AT3G45310 207 / 2e-64 Cysteine proteinases superfamily protein (.1.2) AT1G06260 205 / 1e-63 Cysteine proteinases superfamily protein (.1) AT3G19400 204 / 4e-63 Cysteine proteinases superfamily protein (.1.2) AT1G47128 206 / 9e-63 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028797 [exp] 612 / 0 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10024303 [exp] 499 / 2e-178 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10002103 [exp] 447 / 2e-159 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10038684 [exp] 384 / 1e-132 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10017489 [exp] 369 / 1e-129 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10037951 [exp] 349 / 2e-117 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10020734 [exp] 209 / 5e-65 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10020722 [exp] 206 / 8e-64 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 205 / 1e-63 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121300 [exp] 562 / 0 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.004G160300 [exp] 561 / 0 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.002G028700 [exp] 531 / 0 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 508 / 0 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.010G228400 [exp] 375 / 9e-130 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.007G047600 [exp] 210 / 3e-65 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.006G141700 [exp] 207 / 3e-64 AT3G45310 590 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.004G207600 [exp] 204 / 5e-63 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G141600 [exp] 202 / 4e-62 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.009G098100 [exp] 204 / 1e-61 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10017487 pacid=23163099 polypeptide=Lus10017487 locus=Lus10017487.g ID=Lus10017487.BGIv1.0 annot-version=v1.0 ATGCAAACGAACGATCGTCCTCTCCCGGCAACCTCCTCGGGGCGCCGGAGCACCACTTCCATATCTTACCACTTCCATCTCTTCAAGCAGAGGTTCGGGA AATCCTACGCCTCGCAGGAGGAGCACGACCACCGGTTCAGTGTCTTCAAGGCCAACCTGAGGCGCGCAGCTCGTAACCAGAGGCTTGACCCCAGCGCCTC CCACGGAGTCACTCGCTTCTCCGATTTGACTCCTCGCGAGTTCAGGAAGCAGTTCCTAGGTCTGAGGAAGCTCGGGCTCCCCAGCGACGCTACCAAAGCG CCGATCCTGCCGACGAATAACTTGCCGGAGGATTTCGATTGGAGGGAGAAGGGAGCTGTTTCTCCTGTCAAGAATCAGGGTTCATGTGGATCATGCTGGA GTTTCAGCACAACTGGTGCACTAGAAGGCGCTCACTATCTGGCAACTGGAGAGCTTGTGAGTCTCAGTGAGCAGCAGCTTGTGGATTGTGACCATGAGTG TGACCCAGAAGAGAAAGGAGCATGCGACGCTGGATGTGGAGGAGGCCTAATGAACAGTGCCTTCGAGTACACTCTAAAAGCCGGAGGGCTCATGCGAGAG GAAGACTACCCTTACACTGGCACTGACCGCAGCACCTGCAAGTTCGACAAGAGCAAGATCGCAGCCAAAGTAGCAAACTTTAGTGTCATCTCCATTGATG AAGACCAGATTGCTGCTAACCTCGTCCAGAGTGGCCCTCTCGCTGTGGCGATCAATGCGGTGTACATGCAGACCTACATCGGCGGGGTGTCGTGCCCTTA CATCTGCTCGAAGAGGCTAGACCACGGTGTGCTATTGGTGGGGTATGGGGAGGCAGGGTACGCACCGATCAGGATGAAGGAGAAGCCGTACTGGATCATA AAGAACTCGTGGGGGGAGACCTGGGGGGAGAGTGGCTACTACAAGATCTGCAGAGGAAAGAACGTCTGCGGAGTTGATTCCATGGTTTCCTCTGTTGCTG CTGTTCAGACCACTGCTCATTAG
AA sequence Show only first row Show all	>Lus10017487 pacid=23163099 polypeptide=Lus10017487 locus=Lus10017487.g ID=Lus10017487.BGIv1.0 annot-version=v1.0 MQTNDRPLPATSSGRRSTTSISYHFHLFKQRFGKSYASQEEHDHRFSVFKANLRRAARNQRLDPSASHGVTRFSDLTPREFRKQFLGLRKLGLPSDATKA PILPTNNLPEDFDWREKGAVSPVKNQGSCGSCWSFSTTGALEGAHYLATGELVSLSEQQLVDCDHECDPEEKGACDAGCGGGLMNSAFEYTLKAGGLMRE EDYPYTGTDRSTCKFDKSKIAAKVANFSVISIDEDQIAANLVQSGPLAVAINAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGEAGYAPIRMKEKPYWII KNSWGETWGESGYYKICRGKNVCGVDSMVSSVAAVQTTAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	1.0	0.9937
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	4.5	0.9236
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	4.7	0.9089
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	5.2	0.9292
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	8.1	0.9306
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	8.9	0.9271
AT1G64300			Protein kinase family protein ...		Lus10032357 [exp]	9.5	0.8874
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	10.8	0.9106
AT2G32190			unknown protein		Lus10010460 [exp]	16.7	0.8991
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10036198 [exp]	17.3	0.8759

Compare expression of checked genes

Lus10017487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.